General information for g10441.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UTP–glucose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g10441 is located on chr_1: 9857890..9859235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10441 | g10441.t1 | TSS | g10441.t1 | 9856940 | 9856940 |
| chr_1 | g10441 | g10441.t1 | isoform | g10441.t1 | 9857003 | 9858908 |
| chr_1 | g10441 | g10441.t1 | exon | g10441.t1.exon1 | 9857003 | 9857089 |
| chr_1 | g10441 | g10441.t1 | cds | g10441.t1.CDS1 | 9857003 | 9857089 |
| chr_1 | g10441 | g10441.t1 | exon | g10441.t1.exon2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t1 | cds | g10441.t1.CDS2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t1 | exon | g10441.t1.exon3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t1 | cds | g10441.t1.CDS3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t1 | exon | g10441.t1.exon4 | 9858032 | 9858908 |
| chr_1 | g10441 | g10441.t1 | cds | g10441.t1.CDS4 | 9858032 | 9858908 |
| chr_1 | g10441 | g10441.t1 | TTS | g10441.t1 | 9859170 | 9859170 |
Sequences
>g10441.t1 Gene=g10441 Length=1596
ATGCCACTTGTCGGTGTAGTATGTGACTTAAATCATAATCATCATCCTGAACATGGTGTG
GGAGTTAAAAAATTTGAATTTATGGAGAATCGTACACATTCGCGTGTACCAAGCGATGCA
AAAGAATTTCATGAAACAACTAAACGCGATGCATTACGTCACTTGGAACGTGAATTGGAA
AGATTGATCGAGACTGCACCAGTTGATAAGAAGGATGCTTTTCGTGAAGAAATGGATAGT
TTTGCAAAACTATTTGGTAGATTCTTGCAAGAAGATGGACCTTCTGTTGCTTGGAATAGA
ATTGAAAAACTACCACCAGGAGCAGTTAAGGATTATAGTAGTCTCAAAACGCCAACTAAT
AATGAGCATATTCGTTCTATGCTCAACAAATTAGTCGTAGTAAAACTTAATGGTGGTCTT
GGTACATCTATGGGTTGTCATGGACCAAAAAGTGTTATTCCTGTACGAAATGATTTGACA
TTTTTGGACTTGACTGTACAACAAATTGAAAGTCTTAATAAGACGTACAATGCTAATGTG
CCATTGGTTTTGATGAACTCATTCAATACAGATGAAGATACGGAAAAAATTGTTCGTAAA
TATAAAGGCTTTCAAGTGAACATCTATAGCTTCAACCAAAGTGGTTTTCCACGTATCTCG
CGCGATTCACTTCTTCCTGTTGCTCGTAAATACGAAATTGATGACAACATTGAAGCATGG
TATCCTCCTGGTCATGGTGACTTTTACGAGTCTTTCCAAAAATCCGGCTTATTAAAACAA
TTTATCAACGAAGGTCGTGAATATTTATTCCTATCAAATATTGATAACTTAGGCGCAACA
ATCGACTTGGGTATTCTCAATCGCTTACTCGGCGAGACTGACGGTGTTTGTCACGAGTTT
GTAATGGAGGTTACTGATAAGACTCGTGCTGATGTCAAAGGAGGAACTCTCATTCAATAT
GAAAACAAATTGCGCTTGCTTGAAATTGCTCAAGTTCCTAATGAGCATGTTGATGAATTT
AAATCGGTAAAAACGTTCAAATTTTTCAACACCAACAACATTTGGGCGAAATTGGATGCA
ATAGATCGAGTATTAAATGAAGGCAGTATGAACATGGAAATTATTGTCAATAATAAGACA
TTGGATAAAGGTCTGCGAGTTATTCAATTAGAAACTGCTGTCGGTGCAGCTATGAAATGT
TTTGAAAATGCTATCGGAATCAATGTACCAAGATCACGTTTCTTGCCTGTTAAGAAAACC
TCTGATCTTTTGCTAGTAATGTCAAACCTTTATAGTTTAAAAGCTGGCTCTCTAGTTATG
TCGCCTCAAAGAATGTTTCCAACCACACCACTTGTCAAACTAGGCGATAACCATTTTAGT
AAAGTGAAAGAATTTTTGGGTCGATTTGCAAATATTCCTGATATTATTGAATTGGATCAT
TTAACAGTTTCAGGCGATGTAACATTTGGTCGTGGTGTCTCATTGAGAGGTACAGTCATT
ATAATAGCAAACCATGGTGATCGAATTGATATTCCACCAGGTGCTATTTTAGAAAATAAG
ATTGTATCTGGTAACTTGAGAATTTTGGATCATTAG
>g10441.t1 Gene=g10441 Length=531
MPLVGVVCDLNHNHHPEHGVGVKKFEFMENRTHSRVPSDAKEFHETTKRDALRHLERELE
RLIETAPVDKKDAFREEMDSFAKLFGRFLQEDGPSVAWNRIEKLPPGAVKDYSSLKTPTN
NEHIRSMLNKLVVVKLNGGLGTSMGCHGPKSVIPVRNDLTFLDLTVQQIESLNKTYNANV
PLVLMNSFNTDEDTEKIVRKYKGFQVNIYSFNQSGFPRISRDSLLPVARKYEIDDNIEAW
YPPGHGDFYESFQKSGLLKQFINEGREYLFLSNIDNLGATIDLGILNRLLGETDGVCHEF
VMEVTDKTRADVKGGTLIQYENKLRLLEIAQVPNEHVDEFKSVKTFKFFNTNNIWAKLDA
IDRVLNEGSMNMEIIVNNKTLDKGLRVIQLETAVGAAMKCFENAIGINVPRSRFLPVKKT
SDLLLVMSNLYSLKAGSLVMSPQRMFPTTPLVKLGDNHFSKVKEFLGRFANIPDIIELDH
LTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPPGAILENKIVSGNLRILDH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g10441.t1 | CDD | cd00897 | UGPase_euk | 128 | 433 | 0.0 |
| 8 | g10441.t1 | Coils | Coil | Coil | 45 | 65 | - |
| 7 | g10441.t1 | Coils | Coil | Coil | 529 | 531 | - |
| 5 | g10441.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 52 | 417 | 3.5E-163 |
| 6 | g10441.t1 | Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 418 | 531 | 3.1E-48 |
| 2 | g10441.t1 | PANTHER | PTHR43511 | - | 76 | 528 | 7.2E-186 |
| 3 | g10441.t1 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 76 | 528 | 7.2E-186 |
| 9 | g10441.t1 | PIRSF | PIRSF000806 | UDPGP | 29 | 531 | 2.9E-206 |
| 1 | g10441.t1 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 78 | 496 | 2.7E-188 |
| 4 | g10441.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 75 | 504 | 1.56E-90 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006011 | UDP-glucose metabolic process | BP |
| GO:0070569 | uridylyltransferase activity | MF |
| GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00963 (UTP–glucose-1-phosphate uridylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
