General information for g10441.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UTP–glucose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g10441 is located on chr_1: 9857890..9859235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10441 | g10441.t17 | TSS | g10441.t17 | 9856940 | 9856940 |
| chr_1 | g10441 | g10441.t17 | isoform | g10441.t17 | 9857003 | 9858908 |
| chr_1 | g10441 | g10441.t17 | exon | g10441.t17.exon1 | 9857003 | 9857089 |
| chr_1 | g10441 | g10441.t17 | cds | g10441.t17.CDS1 | 9857003 | 9857089 |
| chr_1 | g10441 | g10441.t17 | exon | g10441.t17.exon2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t17 | cds | g10441.t17.CDS2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t17 | exon | g10441.t17.exon3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t17 | cds | g10441.t17.CDS3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t17 | exon | g10441.t17.exon4 | 9858032 | 9858338 |
| chr_1 | g10441 | g10441.t17 | cds | g10441.t17.CDS4 | 9858032 | 9858338 |
| chr_1 | g10441 | g10441.t17 | exon | g10441.t17.exon5 | 9858419 | 9858908 |
| chr_1 | g10441 | g10441.t17 | cds | g10441.t17.CDS5 | 9858419 | 9858445 |
| chr_1 | g10441 | g10441.t17 | TTS | g10441.t17 | 9859170 | 9859170 |
Sequences
>g10441.t17 Gene=g10441 Length=1516
ATGCCACTTGTCGGTGTAGTATGTGACTTAAATCATAATCATCATCCTGAACATGGTGTG
GGAGTTAAAAAATTTGAATTTATGGAGAATCGTACACATTCGCGTGTACCAAGCGATGCA
AAAGAATTTCATGAAACAACTAAACGCGATGCATTACGTCACTTGGAACGTGAATTGGAA
AGATTGATCGAGACTGCACCAGTTGATAAGAAGGATGCTTTTCGTGAAGAAATGGATAGT
TTTGCAAAACTATTTGGTAGATTCTTGCAAGAAGATGGACCTTCTGTTGCTTGGAATAGA
ATTGAAAAACTACCACCAGGAGCAGTTAAGGATTATAGTAGTCTCAAAACGCCAACTAAT
AATGAGCATATTCGTTCTATGCTCAACAAATTAGTCGTAGTAAAACTTAATGGTGGTCTT
GGTACATCTATGGGTTGTCATGGACCAAAAAGTGTTATTCCTGTACGAAATGATTTGACA
TTTTTGGACTTGACTGTACAACAAATTGAAAGTCTTAATAAGACGTACAATGCTAATGTG
CCATTGGTTTTGATGAACTCATTCAATACAGATGAAGATACGGAAAAAATTGTTCGTAAA
TATAAAGGCTTTCAAGTGAACATCTATAGCTTCAACCAAAGTGGTTTTCCACGTATCTCG
CGCGATTCACTTCTTCCTGTTGCTCGTAAATACGAAATTGATGACAACATTGAAGCATGG
TATCCTCCTGGTCATGGTGACTTTTACGAGTCTTTCCAAAAATCCGGCTTATTAAAACAA
TTTATCAACGAAGGTCGTGAATATTTATTCCTATCAAATATTGATAACTTAGGCGCAACA
ATCGACTTGGGTATTCTCAATCGCTTACTCGGCGAGACTGACGGTGTTTGTCACGAGTTT
GTAATGGAGGTTACTGATAAGACTCGTGCTGATGTCAAAGGAGGAACTCTCATTCAATAT
GAAAACAAATTGCGCTTGCTTGAAATTGCTCAAGTTCCTAATGAGCATGTTGATGAATTT
AAATCGTATGAACATGGAAATTATTGTCAATAATAAGACATTGGATAAAGGTCTGCGAGT
TATTCAATTAGAAACTGCTGTCGGTGCAGCTATGAAATGTTTTGAAAATGCTATCGGAAT
CAATGTACCAAGATCACGTTTCTTGCCTGTTAAGAAAACCTCTGATCTTTTGCTAGTAAT
GTCAAACCTTTATAGTTTAAAAGCTGGCTCTCTAGTTATGTCGCCTCAAAGAATGTTTCC
AACCACACCACTTGTCAAACTAGGCGATAACCATTTTAGTAAAGTGAAAGAATTTTTGGG
TCGATTTGCAAATATTCCTGATATTATTGAATTGGATCATTTAACAGTTTCAGGCGATGT
AACATTTGGTCGTGGTGTCTCATTGAGAGGTACAGTCATTATAATAGCAAACCATGGTGA
TCGAATTGATATTCCACCAGGTGCTATTTTAGAAAATAAGATTGTATCTGGTAACTTGAG
AATTTTGGATCATTAG
>g10441.t17 Gene=g10441 Length=350
MPLVGVVCDLNHNHHPEHGVGVKKFEFMENRTHSRVPSDAKEFHETTKRDALRHLERELE
RLIETAPVDKKDAFREEMDSFAKLFGRFLQEDGPSVAWNRIEKLPPGAVKDYSSLKTPTN
NEHIRSMLNKLVVVKLNGGLGTSMGCHGPKSVIPVRNDLTFLDLTVQQIESLNKTYNANV
PLVLMNSFNTDEDTEKIVRKYKGFQVNIYSFNQSGFPRISRDSLLPVARKYEIDDNIEAW
YPPGHGDFYESFQKSGLLKQFINEGREYLFLSNIDNLGATIDLGILNRLLGETDGVCHEF
VMEVTDKTRADVKGGTLIQYENKLRLLEIAQVPNEHVDEFKSYEHGNYCQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10441.t17 | Coils | Coil | Coil | 45 | 65 | - |
| 5 | g10441.t17 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 52 | 350 | 4.7E-123 |
| 2 | g10441.t17 | PANTHER | PTHR43511 | - | 76 | 345 | 2.8E-97 |
| 3 | g10441.t17 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 76 | 345 | 2.8E-97 |
| 1 | g10441.t17 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 78 | 345 | 2.5E-112 |
| 4 | g10441.t17 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 75 | 346 | 1.55E-64 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070569 | uridylyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
