General information for g10441.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UTP–glucose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g10441 is located on chr_1: 9857890..9859235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10441 | g10441.t19 | TSS | g10441.t19 | 9856940 | 9856940 |
| chr_1 | g10441 | g10441.t19 | isoform | g10441.t19 | 9857003 | 9858908 |
| chr_1 | g10441 | g10441.t19 | exon | g10441.t19.exon1 | 9857003 | 9857077 |
| chr_1 | g10441 | g10441.t19 | cds | g10441.t19.CDS1 | 9857003 | 9857077 |
| chr_1 | g10441 | g10441.t19 | exon | g10441.t19.exon2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t19 | cds | g10441.t19.CDS2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t19 | exon | g10441.t19.exon3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t19 | cds | g10441.t19.CDS3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t19 | exon | g10441.t19.exon4 | 9858032 | 9858908 |
| chr_1 | g10441 | g10441.t19 | cds | g10441.t19.CDS4 | 9858032 | 9858908 |
| chr_1 | g10441 | g10441.t19 | TTS | g10441.t19 | 9859170 | 9859170 |
Sequences
>g10441.t19 Gene=g10441 Length=1584
ATGCCACTTGTCGGTGTAGTATGTGACTTAAATCATAATCATCATCCTGAACATGGTGTG
GGAGTTAAAAAATTTAATCGTACACATTCGCGTGTACCAAGCGATGCAAAAGAATTTCAT
GAAACAACTAAACGCGATGCATTACGTCACTTGGAACGTGAATTGGAAAGATTGATCGAG
ACTGCACCAGTTGATAAGAAGGATGCTTTTCGTGAAGAAATGGATAGTTTTGCAAAACTA
TTTGGTAGATTCTTGCAAGAAGATGGACCTTCTGTTGCTTGGAATAGAATTGAAAAACTA
CCACCAGGAGCAGTTAAGGATTATAGTAGTCTCAAAACGCCAACTAATAATGAGCATATT
CGTTCTATGCTCAACAAATTAGTCGTAGTAAAACTTAATGGTGGTCTTGGTACATCTATG
GGTTGTCATGGACCAAAAAGTGTTATTCCTGTACGAAATGATTTGACATTTTTGGACTTG
ACTGTACAACAAATTGAAAGTCTTAATAAGACGTACAATGCTAATGTGCCATTGGTTTTG
ATGAACTCATTCAATACAGATGAAGATACGGAAAAAATTGTTCGTAAATATAAAGGCTTT
CAAGTGAACATCTATAGCTTCAACCAAAGTGGTTTTCCACGTATCTCGCGCGATTCACTT
CTTCCTGTTGCTCGTAAATACGAAATTGATGACAACATTGAAGCATGGTATCCTCCTGGT
CATGGTGACTTTTACGAGTCTTTCCAAAAATCCGGCTTATTAAAACAATTTATCAACGAA
GGTCGTGAATATTTATTCCTATCAAATATTGATAACTTAGGCGCAACAATCGACTTGGGT
ATTCTCAATCGCTTACTCGGCGAGACTGACGGTGTTTGTCACGAGTTTGTAATGGAGGTT
ACTGATAAGACTCGTGCTGATGTCAAAGGAGGAACTCTCATTCAATATGAAAACAAATTG
CGCTTGCTTGAAATTGCTCAAGTTCCTAATGAGCATGTTGATGAATTTAAATCGGTAAAA
ACGTTCAAATTTTTCAACACCAACAACATTTGGGCGAAATTGGATGCAATAGATCGAGTA
TTAAATGAAGGCAGTATGAACATGGAAATTATTGTCAATAATAAGACATTGGATAAAGGT
CTGCGAGTTATTCAATTAGAAACTGCTGTCGGTGCAGCTATGAAATGTTTTGAAAATGCT
ATCGGAATCAATGTACCAAGATCACGTTTCTTGCCTGTTAAGAAAACCTCTGATCTTTTG
CTAGTAATGTCAAACCTTTATAGTTTAAAAGCTGGCTCTCTAGTTATGTCGCCTCAAAGA
ATGTTTCCAACCACACCACTTGTCAAACTAGGCGATAACCATTTTAGTAAAGTGAAAGAA
TTTTTGGGTCGATTTGCAAATATTCCTGATATTATTGAATTGGATCATTTAACAGTTTCA
GGCGATGTAACATTTGGTCGTGGTGTCTCATTGAGAGGTACAGTCATTATAATAGCAAAC
CATGGTGATCGAATTGATATTCCACCAGGTGCTATTTTAGAAAATAAGATTGTATCTGGT
AACTTGAGAATTTTGGATCATTAG
>g10441.t19 Gene=g10441 Length=527
MPLVGVVCDLNHNHHPEHGVGVKKFNRTHSRVPSDAKEFHETTKRDALRHLERELERLIE
TAPVDKKDAFREEMDSFAKLFGRFLQEDGPSVAWNRIEKLPPGAVKDYSSLKTPTNNEHI
RSMLNKLVVVKLNGGLGTSMGCHGPKSVIPVRNDLTFLDLTVQQIESLNKTYNANVPLVL
MNSFNTDEDTEKIVRKYKGFQVNIYSFNQSGFPRISRDSLLPVARKYEIDDNIEAWYPPG
HGDFYESFQKSGLLKQFINEGREYLFLSNIDNLGATIDLGILNRLLGETDGVCHEFVMEV
TDKTRADVKGGTLIQYENKLRLLEIAQVPNEHVDEFKSVKTFKFFNTNNIWAKLDAIDRV
LNEGSMNMEIIVNNKTLDKGLRVIQLETAVGAAMKCFENAIGINVPRSRFLPVKKTSDLL
LVMSNLYSLKAGSLVMSPQRMFPTTPLVKLGDNHFSKVKEFLGRFANIPDIIELDHLTVS
GDVTFGRGVSLRGTVIIIANHGDRIDIPPGAILENKIVSGNLRILDH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10441.t19 | CDD | cd00897 | UGPase_euk | 124 | 429 | 0.0 |
| 7 | g10441.t19 | Coils | Coil | Coil | 41 | 61 | - |
| 5 | g10441.t19 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 48 | 413 | 3.4E-163 |
| 6 | g10441.t19 | Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 414 | 527 | 3.0E-48 |
| 2 | g10441.t19 | PANTHER | PTHR43511 | - | 72 | 524 | 7.6E-186 |
| 3 | g10441.t19 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 72 | 524 | 7.6E-186 |
| 8 | g10441.t19 | PIRSF | PIRSF000806 | UDPGP | 26 | 527 | 3.0E-206 |
| 1 | g10441.t19 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 74 | 492 | 2.6E-188 |
| 4 | g10441.t19 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 71 | 500 | 1.61E-90 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006011 | UDP-glucose metabolic process | BP |
| GO:0070569 | uridylyltransferase activity | MF |
| GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00963 (UTP–glucose-1-phosphate uridylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed