General information for g10441.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UTP–glucose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g10441 is located on chr_1: 9857890..9859235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10441 | g10441.t2 | TSS | g10441.t2 | 9853935 | 9853935 |
| chr_1 | g10441 | g10441.t2 | isoform | g10441.t2 | 9853996 | 9858908 |
| chr_1 | g10441 | g10441.t2 | exon | g10441.t2.exon1 | 9853996 | 9854019 |
| chr_1 | g10441 | g10441.t2 | cds | g10441.t2.CDS1 | 9853996 | 9854019 |
| chr_1 | g10441 | g10441.t2 | exon | g10441.t2.exon2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t2 | cds | g10441.t2.CDS2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t2 | exon | g10441.t2.exon3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t2 | cds | g10441.t2.CDS3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t2 | exon | g10441.t2.exon4 | 9858032 | 9858908 |
| chr_1 | g10441 | g10441.t2 | cds | g10441.t2.CDS4 | 9858032 | 9858908 |
| chr_1 | g10441 | g10441.t2 | TTS | g10441.t2 | 9859170 | 9859170 |
Sequences
>g10441.t2 Gene=g10441 Length=1533
ATGCTTCAAATAGACGATAAAAAGAATCGTACACATTCGCGTGTACCAAGCGATGCAAAA
GAATTTCATGAAACAACTAAACGCGATGCATTACGTCACTTGGAACGTGAATTGGAAAGA
TTGATCGAGACTGCACCAGTTGATAAGAAGGATGCTTTTCGTGAAGAAATGGATAGTTTT
GCAAAACTATTTGGTAGATTCTTGCAAGAAGATGGACCTTCTGTTGCTTGGAATAGAATT
GAAAAACTACCACCAGGAGCAGTTAAGGATTATAGTAGTCTCAAAACGCCAACTAATAAT
GAGCATATTCGTTCTATGCTCAACAAATTAGTCGTAGTAAAACTTAATGGTGGTCTTGGT
ACATCTATGGGTTGTCATGGACCAAAAAGTGTTATTCCTGTACGAAATGATTTGACATTT
TTGGACTTGACTGTACAACAAATTGAAAGTCTTAATAAGACGTACAATGCTAATGTGCCA
TTGGTTTTGATGAACTCATTCAATACAGATGAAGATACGGAAAAAATTGTTCGTAAATAT
AAAGGCTTTCAAGTGAACATCTATAGCTTCAACCAAAGTGGTTTTCCACGTATCTCGCGC
GATTCACTTCTTCCTGTTGCTCGTAAATACGAAATTGATGACAACATTGAAGCATGGTAT
CCTCCTGGTCATGGTGACTTTTACGAGTCTTTCCAAAAATCCGGCTTATTAAAACAATTT
ATCAACGAAGGTCGTGAATATTTATTCCTATCAAATATTGATAACTTAGGCGCAACAATC
GACTTGGGTATTCTCAATCGCTTACTCGGCGAGACTGACGGTGTTTGTCACGAGTTTGTA
ATGGAGGTTACTGATAAGACTCGTGCTGATGTCAAAGGAGGAACTCTCATTCAATATGAA
AACAAATTGCGCTTGCTTGAAATTGCTCAAGTTCCTAATGAGCATGTTGATGAATTTAAA
TCGGTAAAAACGTTCAAATTTTTCAACACCAACAACATTTGGGCGAAATTGGATGCAATA
GATCGAGTATTAAATGAAGGCAGTATGAACATGGAAATTATTGTCAATAATAAGACATTG
GATAAAGGTCTGCGAGTTATTCAATTAGAAACTGCTGTCGGTGCAGCTATGAAATGTTTT
GAAAATGCTATCGGAATCAATGTACCAAGATCACGTTTCTTGCCTGTTAAGAAAACCTCT
GATCTTTTGCTAGTAATGTCAAACCTTTATAGTTTAAAAGCTGGCTCTCTAGTTATGTCG
CCTCAAAGAATGTTTCCAACCACACCACTTGTCAAACTAGGCGATAACCATTTTAGTAAA
GTGAAAGAATTTTTGGGTCGATTTGCAAATATTCCTGATATTATTGAATTGGATCATTTA
ACAGTTTCAGGCGATGTAACATTTGGTCGTGGTGTCTCATTGAGAGGTACAGTCATTATA
ATAGCAAACCATGGTGATCGAATTGATATTCCACCAGGTGCTATTTTAGAAAATAAGATT
GTATCTGGTAACTTGAGAATTTTGGATCATTAG
>g10441.t2 Gene=g10441 Length=510
MLQIDDKKNRTHSRVPSDAKEFHETTKRDALRHLERELERLIETAPVDKKDAFREEMDSF
AKLFGRFLQEDGPSVAWNRIEKLPPGAVKDYSSLKTPTNNEHIRSMLNKLVVVKLNGGLG
TSMGCHGPKSVIPVRNDLTFLDLTVQQIESLNKTYNANVPLVLMNSFNTDEDTEKIVRKY
KGFQVNIYSFNQSGFPRISRDSLLPVARKYEIDDNIEAWYPPGHGDFYESFQKSGLLKQF
INEGREYLFLSNIDNLGATIDLGILNRLLGETDGVCHEFVMEVTDKTRADVKGGTLIQYE
NKLRLLEIAQVPNEHVDEFKSVKTFKFFNTNNIWAKLDAIDRVLNEGSMNMEIIVNNKTL
DKGLRVIQLETAVGAAMKCFENAIGINVPRSRFLPVKKTSDLLLVMSNLYSLKAGSLVMS
PQRMFPTTPLVKLGDNHFSKVKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVII
IANHGDRIDIPPGAILENKIVSGNLRILDH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10441.t2 | CDD | cd00897 | UGPase_euk | 107 | 412 | 0.0 |
| 7 | g10441.t2 | Coils | Coil | Coil | 24 | 44 | - |
| 5 | g10441.t2 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 31 | 396 | 3.1E-163 |
| 6 | g10441.t2 | Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 397 | 510 | 2.9E-48 |
| 10 | g10441.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - |
| 2 | g10441.t2 | PANTHER | PTHR43511 | - | 55 | 507 | 7.0E-186 |
| 3 | g10441.t2 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 55 | 507 | 7.0E-186 |
| 8 | g10441.t2 | PIRSF | PIRSF000806 | UDPGP | 8 | 510 | 2.5E-206 |
| 1 | g10441.t2 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 57 | 475 | 2.3E-188 |
| 4 | g10441.t2 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 54 | 483 | 1.39E-90 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006011 | UDP-glucose metabolic process | BP |
| GO:0070569 | uridylyltransferase activity | MF |
| GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00963 (UTP–glucose-1-phosphate uridylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
