Gene loci information

Transcript annotation

  • This transcript has been annotated as UTP–glucose-1-phosphate uridylyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10441 g10441.t24 TSS g10441.t24 9856940 9856940
chr_1 g10441 g10441.t24 isoform g10441.t24 9857890 9859235
chr_1 g10441 g10441.t24 exon g10441.t24.exon1 9857890 9859235
chr_1 g10441 g10441.t24 cds g10441.t24.CDS1 9858216 9858908
chr_1 g10441 g10441.t24 TTS g10441.t24 NA NA

Sequences

>g10441.t24 Gene=g10441 Length=1346
GTAATTTGATTTATATGCGTTAGTTTTTCTTCTTTTTCAAATTTAATATTCCTCATAATT
GAAATTGATTTTTTACTACTTAACATTTTCCTTCAAATTGTGTCTAAGATAACTTTTTGA
ACTAATATAATTTAATCCATAGGTATCCTCCTGGTCATGGTGACTTTTACGAGTCTTTCC
AAAAATCCGGCTTATTAAAACAATTTATCAACGAAGGTCGTGAATATTTATTCCTATCAA
ATATTGATAACTTAGGCGCAACAATCGACTTGGGTATTCTCAATCGCTTACTCGGCGAGA
CTGACGGTGTTTGTCACGAGTTTGTAATGGAGGTTACTGATAAGACTCGTGCTGATGTCA
AAGGAGGAACTCTCATTCAATATGAAAACAAATTGCGCTTGCTTGAAATTGCTCAAGTTC
CTAATGAGCATGTTGATGAATTTAAATCGGTAAAAACGTTCAAATTTTTCAACACCAACA
ACATTTGGGCGAAATTGGATGCAATAGATCGAGTATTAAATGAAGGCAGTATGAACATGG
AAATTATTGTCAATAATAAGACATTGGATAAAGGTCTGCGAGTTATTCAATTAGAAACTG
CTGTCGGTGCAGCTATGAAATGTTTTGAAAATGCTATCGGAATCAATGTACCAAGATCAC
GTTTCTTGCCTGTTAAGAAAACCTCTGATCTTTTGCTAGTAATGTCAAACCTTTATAGTT
TAAAAGCTGGCTCTCTAGTTATGTCGCCTCAAAGAATGTTTCCAACCACACCACTTGTCA
AACTAGGCGATAACCATTTTAGTAAAGTGAAAGAATTTTTGGGTCGATTTGCAAATATTC
CTGATATTATTGAATTGGATCATTTAACAGTTTCAGGCGATGTAACATTTGGTCGTGGTG
TCTCATTGAGAGGTACAGTCATTATAATAGCAAACCATGGTGATCGAATTGATATTCCAC
CAGGTGCTATTTTAGAAAATAAGATTGTATCTGGTAACTTGAGAATTTTGGATCATTAGA
AATGTTTTTGCTATTTAGCAATATGAACTATATTTATCAAGAAATAGAACTGTTTTTAGA
ATCATCACTTAAAGGAAATAGAGTTTTATGATTTCTACTGTTAATATTTTTTAAATGCAA
ATATGCATTACAAAAGATTTTATTTTAACATTGTTTTATTTTAGAAATGTATGTAACGTG
AAACACTTGAAAATATACATAATAAAATTGTTTTGCAAGAAAATAAACTGAATAAAAAAT
GAATTTGTTTTCAAAAACTTTAAACATGCTTTGGTCTTTATGAAATTATAATACTTAATT
TTTCCAACGTTTTTATCTTTGCAGTT

>g10441.t24 Gene=g10441 Length=230
MEVTDKTRADVKGGTLIQYENKLRLLEIAQVPNEHVDEFKSVKTFKFFNTNNIWAKLDAI
DRVLNEGSMNMEIIVNNKTLDKGLRVIQLETAVGAAMKCFENAIGINVPRSRFLPVKKTS
DLLLVMSNLYSLKAGSLVMSPQRMFPTTPLVKLGDNHFSKVKEFLGRFANIPDIIELDHL
TVSGDVTFGRGVSLRGTVIIIANHGDRIDIPPGAILENKIVSGNLRILDH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g10441.t24 Gene3D G3DSA:3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 116 0
6 g10441.t24 Gene3D G3DSA:2.160.10.10 Hexapeptide repeat proteins 117 230 0
2 g10441.t24 PANTHER PTHR43511 - 1 227 0
3 g10441.t24 PANTHER PTHR43511:SF4 UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 1 227 0
1 g10441.t24 Pfam PF01704 UTP–glucose-1-phosphate uridylyltransferase 1 195 0
4 g10441.t24 SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases 1 203 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0070569 uridylyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values