General information for g10441.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UTP–glucose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g10441 is located on chr_1: 9857890..9859235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10441 | g10441.t3 | TSS | g10441.t3 | 9853935 | 9853935 |
| chr_1 | g10441 | g10441.t3 | isoform | g10441.t3 | 9853996 | 9857811 |
| chr_1 | g10441 | g10441.t3 | exon | g10441.t3.exon1 | 9853996 | 9854019 |
| chr_1 | g10441 | g10441.t3 | cds | g10441.t3.CDS1 | 9853996 | 9854019 |
| chr_1 | g10441 | g10441.t3 | exon | g10441.t3.exon2 | 9857157 | 9857583 |
| chr_1 | g10441 | g10441.t3 | cds | g10441.t3.CDS2 | 9857157 | 9857583 |
| chr_1 | g10441 | g10441.t3 | exon | g10441.t3.exon3 | 9857646 | 9857811 |
| chr_1 | g10441 | g10441.t3 | cds | g10441.t3.CDS3 | 9857646 | 9857653 |
| chr_1 | g10441 | g10441.t3 | TTS | g10441.t3 | NA | NA |
Sequences
>g10441.t3 Gene=g10441 Length=617
ATGCTTCAAATAGACGATAAAAAGAATCGTACACATTCGCGTGTACCAAGCGATGCAAAA
GAATTTCATGAAACAACTAAACGCGATGCATTACGTCACTTGGAACGTGAATTGGAAAGA
TTGATCGAGACTGCACCAGTTGATAAGAAGGATGCTTTTCGTGAAGAAATGGATAGTTTT
GCAAAACTATTTGGTAGATTCTTGCAAGAAGATGGACCTTCTGTTGCTTGGAATAGAATT
GAAAAACTACCACCAGGAGCAGTTAAGGATTATAGTAGTCTCAAAACGCCAACTAATAAT
GAGCATATTCGTTCTATGCTCAACAAATTAGTCGTAGTAAAACTTAATGGTGGTCTTGGT
ACATCTATGGGTTGTCATGGACCAAAAAGTGTTATTCCTGTACGAAATGATTTGACATTT
TTGGACTTGACTGTACAACAAATTGAAGTGAAGTCTTAATAAGACGTACAATGCTAATGT
GCCATTGGTTTTGATGAACTCATTCAATACAGATGAAGATACGGAAAAAATTGTTCGTAA
ATATAAAGGCTTTCAAGTGAACATCTATAGCTTCAACCAAAGTGGTTTTCCACGTATCTC
GCGCGATTCACTTCTTC
>g10441.t3 Gene=g10441 Length=152
MLQIDDKKNRTHSRVPSDAKEFHETTKRDALRHLERELERLIETAPVDKKDAFREEMDSF
AKLFGRFLQEDGPSVAWNRIEKLPPGAVKDYSSLKTPTNNEHIRSMLNKLVVVKLNGGLG
TSMGCHGPKSVIPVRNDLTFLDLTVQQIEVKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10441.t3 | Coils | Coil | Coil | 24 | 44 | - |
| 6 | g10441.t3 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 30 | 151 | 3.7E-41 |
| 5 | g10441.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - |
| 2 | g10441.t3 | PANTHER | PTHR43511 | - | 55 | 150 | 6.7E-22 |
| 3 | g10441.t3 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 55 | 150 | 6.7E-22 |
| 1 | g10441.t3 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 57 | 149 | 1.8E-30 |
| 4 | g10441.t3 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 51 | 149 | 1.69E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070569 | uridylyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed