General information for g10441.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UTP–glucose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g10441 is located on chr_1: 9857890..9859235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10441 | g10441.t4 | TSS | g10441.t4 | 9853935 | 9853935 |
| chr_1 | g10441 | g10441.t4 | isoform | g10441.t4 | 9853996 | 9857838 |
| chr_1 | g10441 | g10441.t4 | exon | g10441.t4.exon1 | 9853996 | 9854376 |
| chr_1 | g10441 | g10441.t4 | cds | g10441.t4.CDS1 | 9854338 | 9854376 |
| chr_1 | g10441 | g10441.t4 | exon | g10441.t4.exon2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t4 | cds | g10441.t4.CDS2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t4 | exon | g10441.t4.exon3 | 9857646 | 9857838 |
| chr_1 | g10441 | g10441.t4 | cds | g10441.t4.CDS3 | 9857646 | 9857837 |
| chr_1 | g10441 | g10441.t4 | TTS | g10441.t4 | NA | NA |
Sequences
>g10441.t4 Gene=g10441 Length=997
ATGCTTCAAATAGACGATAAAAAGGTAAGTAATTTTGTATAAGCCAAAATGCTATAGATA
AAAGTTGAATTTGGTGTGAATTAATAACAGAAAACAAGAGAAATAGTATTAAATGTTTTT
GTTTTTCATTGATGACCTTCTGATTCACCTTCCAAGGCTGGCCATATTTTGGAAAAAAAA
TTTATCGGCTTTTTAAAATTTACAGTGATAATAGAATAAAAACATTTATACAATGTGCGT
GCGTGTACACCAGTTAGTCGGTCTATGCAATTTCATGAGACAACAGCTGTTCAAAGCTAT
AATTTTAATATAATATTGAAATAAAAATTTTCTTATCACATAATGGCTTTAAATTCACCA
AAACATCTTGTAAATATTAAGAATCGTACACATTCGCGTGTACCAAGCGATGCAAAAGAA
TTTCATGAAACAACTAAACGCGATGCATTACGTCACTTGGAACGTGAATTGGAAAGATTG
ATCGAGACTGCACCAGTTGATAAGAAGGATGCTTTTCGTGAAGAAATGGATAGTTTTGCA
AAACTATTTGGTAGATTCTTGCAAGAAGATGGACCTTCTGTTGCTTGGAATAGAATTGAA
AAACTACCACCAGGAGCAGTTAAGGATTATAGTAGTCTCAAAACGCCAACTAATAATGAG
CATATTCGTTCTATGCTCAACAAATTAGTCGTAGTAAAACTTAATGGTGGTCTTGGTACA
TCTATGGGTTGTCATGGACCAAAAAGTGTTATTCCTGTACGAAATGATTTGACATTTTTG
GACTTGACTGTACAACAAATTGAAAGTCTTAATAAGACGTACAATGCTAATGTGCCATTG
GTTTTGATGAACTCATTCAATACAGATGAAGATACGGAAAAAATTGTTCGTAAATATAAA
GGCTTTCAAGTGAACATCTATAGCTTCAACCAAAGTGGTTTTCCACGTATCTCGCGCGAT
TCACTTCTTCCTGTTGCTCGTAAATACGAAATTGATG
>g10441.t4 Gene=g10441 Length=218
MALNSPKHLVNIKNRTHSRVPSDAKEFHETTKRDALRHLERELERLIETAPVDKKDAFRE
EMDSFAKLFGRFLQEDGPSVAWNRIEKLPPGAVKDYSSLKTPTNNEHIRSMLNKLVVVKL
NGGLGTSMGCHGPKSVIPVRNDLTFLDLTVQQIESLNKTYNANVPLVLMNSFNTDEDTEK
IVRKYKGFQVNIYSFNQSGFPRISRDSLLPVARKYEID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10441.t4 | Coils | Coil | Coil | 29 | 49 | - |
| 5 | g10441.t4 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 36 | 218 | 9.6E-71 |
| 2 | g10441.t4 | PANTHER | PTHR43511 | - | 60 | 216 | 1.6E-50 |
| 3 | g10441.t4 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 60 | 216 | 1.6E-50 |
| 1 | g10441.t4 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 62 | 215 | 1.2E-59 |
| 4 | g10441.t4 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 59 | 217 | 7.76E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070569 | uridylyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
