General information for g10441.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UTP–glucose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g10441 is located on chr_1: 9857890..9859235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10441 | g10441.t5 | TSS | g10441.t5 | 9853935 | 9853935 |
| chr_1 | g10441 | g10441.t5 | isoform | g10441.t5 | 9853996 | 9858908 |
| chr_1 | g10441 | g10441.t5 | exon | g10441.t5.exon1 | 9853996 | 9854019 |
| chr_1 | g10441 | g10441.t5 | exon | g10441.t5.exon2 | 9854152 | 9854376 |
| chr_1 | g10441 | g10441.t5 | cds | g10441.t5.CDS1 | 9854338 | 9854376 |
| chr_1 | g10441 | g10441.t5 | exon | g10441.t5.exon3 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t5 | cds | g10441.t5.CDS2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t5 | exon | g10441.t5.exon4 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t5 | cds | g10441.t5.CDS3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t5 | exon | g10441.t5.exon5 | 9858032 | 9858908 |
| chr_1 | g10441 | g10441.t5 | cds | g10441.t5.CDS4 | 9858032 | 9858908 |
| chr_1 | g10441 | g10441.t5 | TTS | g10441.t5 | 9859170 | 9859170 |
Sequences
>g10441.t5 Gene=g10441 Length=1758
ATGCTTCAAATAGACGATAAAAAGGCTGGCCATATTTTGGAAAAAAAATTTATCGGCTTT
TTAAAATTTACAGTGATAATAGAATAAAAACATTTATACAATGTGCGTGCGTGTACACCA
GTTAGTCGGTCTATGCAATTTCATGAGACAACAGCTGTTCAAAGCTATAATTTTAATATA
ATATTGAAATAAAAATTTTCTTATCACATAATGGCTTTAAATTCACCAAAACATCTTGTA
AATATTAAGAATCGTACACATTCGCGTGTACCAAGCGATGCAAAAGAATTTCATGAAACA
ACTAAACGCGATGCATTACGTCACTTGGAACGTGAATTGGAAAGATTGATCGAGACTGCA
CCAGTTGATAAGAAGGATGCTTTTCGTGAAGAAATGGATAGTTTTGCAAAACTATTTGGT
AGATTCTTGCAAGAAGATGGACCTTCTGTTGCTTGGAATAGAATTGAAAAACTACCACCA
GGAGCAGTTAAGGATTATAGTAGTCTCAAAACGCCAACTAATAATGAGCATATTCGTTCT
ATGCTCAACAAATTAGTCGTAGTAAAACTTAATGGTGGTCTTGGTACATCTATGGGTTGT
CATGGACCAAAAAGTGTTATTCCTGTACGAAATGATTTGACATTTTTGGACTTGACTGTA
CAACAAATTGAAAGTCTTAATAAGACGTACAATGCTAATGTGCCATTGGTTTTGATGAAC
TCATTCAATACAGATGAAGATACGGAAAAAATTGTTCGTAAATATAAAGGCTTTCAAGTG
AACATCTATAGCTTCAACCAAAGTGGTTTTCCACGTATCTCGCGCGATTCACTTCTTCCT
GTTGCTCGTAAATACGAAATTGATGACAACATTGAAGCATGGTATCCTCCTGGTCATGGT
GACTTTTACGAGTCTTTCCAAAAATCCGGCTTATTAAAACAATTTATCAACGAAGGTCGT
GAATATTTATTCCTATCAAATATTGATAACTTAGGCGCAACAATCGACTTGGGTATTCTC
AATCGCTTACTCGGCGAGACTGACGGTGTTTGTCACGAGTTTGTAATGGAGGTTACTGAT
AAGACTCGTGCTGATGTCAAAGGAGGAACTCTCATTCAATATGAAAACAAATTGCGCTTG
CTTGAAATTGCTCAAGTTCCTAATGAGCATGTTGATGAATTTAAATCGGTAAAAACGTTC
AAATTTTTCAACACCAACAACATTTGGGCGAAATTGGATGCAATAGATCGAGTATTAAAT
GAAGGCAGTATGAACATGGAAATTATTGTCAATAATAAGACATTGGATAAAGGTCTGCGA
GTTATTCAATTAGAAACTGCTGTCGGTGCAGCTATGAAATGTTTTGAAAATGCTATCGGA
ATCAATGTACCAAGATCACGTTTCTTGCCTGTTAAGAAAACCTCTGATCTTTTGCTAGTA
ATGTCAAACCTTTATAGTTTAAAAGCTGGCTCTCTAGTTATGTCGCCTCAAAGAATGTTT
CCAACCACACCACTTGTCAAACTAGGCGATAACCATTTTAGTAAAGTGAAAGAATTTTTG
GGTCGATTTGCAAATATTCCTGATATTATTGAATTGGATCATTTAACAGTTTCAGGCGAT
GTAACATTTGGTCGTGGTGTCTCATTGAGAGGTACAGTCATTATAATAGCAAACCATGGT
GATCGAATTGATATTCCACCAGGTGCTATTTTAGAAAATAAGATTGTATCTGGTAACTTG
AGAATTTTGGATCATTAG
>g10441.t5 Gene=g10441 Length=515
MALNSPKHLVNIKNRTHSRVPSDAKEFHETTKRDALRHLERELERLIETAPVDKKDAFRE
EMDSFAKLFGRFLQEDGPSVAWNRIEKLPPGAVKDYSSLKTPTNNEHIRSMLNKLVVVKL
NGGLGTSMGCHGPKSVIPVRNDLTFLDLTVQQIESLNKTYNANVPLVLMNSFNTDEDTEK
IVRKYKGFQVNIYSFNQSGFPRISRDSLLPVARKYEIDDNIEAWYPPGHGDFYESFQKSG
LLKQFINEGREYLFLSNIDNLGATIDLGILNRLLGETDGVCHEFVMEVTDKTRADVKGGT
LIQYENKLRLLEIAQVPNEHVDEFKSVKTFKFFNTNNIWAKLDAIDRVLNEGSMNMEIIV
NNKTLDKGLRVIQLETAVGAAMKCFENAIGINVPRSRFLPVKKTSDLLLVMSNLYSLKAG
SLVMSPQRMFPTTPLVKLGDNHFSKVKEFLGRFANIPDIIELDHLTVSGDVTFGRGVSLR
GTVIIIANHGDRIDIPPGAILENKIVSGNLRILDH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10441.t5 | CDD | cd00897 | UGPase_euk | 112 | 417 | 0.0 |
| 7 | g10441.t5 | Coils | Coil | Coil | 29 | 49 | - |
| 5 | g10441.t5 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 36 | 401 | 3.2E-163 |
| 6 | g10441.t5 | Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 402 | 515 | 2.9E-48 |
| 2 | g10441.t5 | PANTHER | PTHR43511 | - | 60 | 512 | 6.7E-186 |
| 3 | g10441.t5 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 60 | 512 | 6.7E-186 |
| 8 | g10441.t5 | PIRSF | PIRSF000806 | UDPGP | 13 | 515 | 2.6E-206 |
| 1 | g10441.t5 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 62 | 480 | 2.4E-188 |
| 4 | g10441.t5 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 59 | 488 | 1.42E-90 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006011 | UDP-glucose metabolic process | BP |
| GO:0070569 | uridylyltransferase activity | MF |
| GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00963 (UTP–glucose-1-phosphate uridylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
