General information for g10441.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UTP–glucose-1-phosphate uridylyltransferase.
Parent gene
- The parent gene g10441 is located on chr_1: 9857890..9859235 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10441 | g10441.t6 | TSS | g10441.t6 | 9853935 | 9853935 |
| chr_1 | g10441 | g10441.t6 | isoform | g10441.t6 | 9853996 | 9858908 |
| chr_1 | g10441 | g10441.t6 | exon | g10441.t6.exon1 | 9853996 | 9854019 |
| chr_1 | g10441 | g10441.t6 | cds | g10441.t6.CDS1 | 9853996 | 9854019 |
| chr_1 | g10441 | g10441.t6 | exon | g10441.t6.exon2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t6 | cds | g10441.t6.CDS2 | 9857157 | 9857579 |
| chr_1 | g10441 | g10441.t6 | exon | g10441.t6.exon3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t6 | cds | g10441.t6.CDS3 | 9857646 | 9857854 |
| chr_1 | g10441 | g10441.t6 | exon | g10441.t6.exon4 | 9858032 | 9858437 |
| chr_1 | g10441 | g10441.t6 | cds | g10441.t6.CDS4 | 9858032 | 9858437 |
| chr_1 | g10441 | g10441.t6 | exon | g10441.t6.exon5 | 9858522 | 9858908 |
| chr_1 | g10441 | g10441.t6 | cds | g10441.t6.CDS5 | 9858522 | 9858908 |
| chr_1 | g10441 | g10441.t6 | TTS | g10441.t6 | 9859170 | 9859170 |
Sequences
>g10441.t6 Gene=g10441 Length=1449
ATGCTTCAAATAGACGATAAAAAGAATCGTACACATTCGCGTGTACCAAGCGATGCAAAA
GAATTTCATGAAACAACTAAACGCGATGCATTACGTCACTTGGAACGTGAATTGGAAAGA
TTGATCGAGACTGCACCAGTTGATAAGAAGGATGCTTTTCGTGAAGAAATGGATAGTTTT
GCAAAACTATTTGGTAGATTCTTGCAAGAAGATGGACCTTCTGTTGCTTGGAATAGAATT
GAAAAACTACCACCAGGAGCAGTTAAGGATTATAGTAGTCTCAAAACGCCAACTAATAAT
GAGCATATTCGTTCTATGCTCAACAAATTAGTCGTAGTAAAACTTAATGGTGGTCTTGGT
ACATCTATGGGTTGTCATGGACCAAAAAGTGTTATTCCTGTACGAAATGATTTGACATTT
TTGGACTTGACTGTACAACAAATTGAAAGTCTTAATAAGACGTACAATGCTAATGTGCCA
TTGGTTTTGATGAACTCATTCAATACAGATGAAGATACGGAAAAAATTGTTCGTAAATAT
AAAGGCTTTCAAGTGAACATCTATAGCTTCAACCAAAGTGGTTTTCCACGTATCTCGCGC
GATTCACTTCTTCCTGTTGCTCGTAAATACGAAATTGATGACAACATTGAAGCATGGTAT
CCTCCTGGTCATGGTGACTTTTACGAGTCTTTCCAAAAATCCGGCTTATTAAAACAATTT
ATCAACGAAGGTCGTGAATATTTATTCCTATCAAATATTGATAACTTAGGCGCAACAATC
GACTTGGGTATTCTCAATCGCTTACTCGGCGAGACTGACGGTGTTTGTCACGAGTTTGTA
ATGGAGGTTACTGATAAGACTCGTGCTGATGTCAAAGGAGGAACTCTCATTCAATATGAA
AACAAATTGCGCTTGCTTGAAATTGCTCAAGTTCCTAATGAGCATGTTGATGAATTTAAA
TCGGTAAAAACGTTCAAATTTTTCAACACCAACAACATTTGGGCGAAATTGGATGCAATA
GATCGAGTATTAAATGAAGGCAGTATGAACATGGAAATTATTGCTATCGGAATCAATGTA
CCAAGATCACGTTTCTTGCCTGTTAAGAAAACCTCTGATCTTTTGCTAGTAATGTCAAAC
CTTTATAGTTTAAAAGCTGGCTCTCTAGTTATGTCGCCTCAAAGAATGTTTCCAACCACA
CCACTTGTCAAACTAGGCGATAACCATTTTAGTAAAGTGAAAGAATTTTTGGGTCGATTT
GCAAATATTCCTGATATTATTGAATTGGATCATTTAACAGTTTCAGGCGATGTAACATTT
GGTCGTGGTGTCTCATTGAGAGGTACAGTCATTATAATAGCAAACCATGGTGATCGAATT
GATATTCCACCAGGTGCTATTTTAGAAAATAAGATTGTATCTGGTAACTTGAGAATTTTG
GATCATTAG
>g10441.t6 Gene=g10441 Length=482
MLQIDDKKNRTHSRVPSDAKEFHETTKRDALRHLERELERLIETAPVDKKDAFREEMDSF
AKLFGRFLQEDGPSVAWNRIEKLPPGAVKDYSSLKTPTNNEHIRSMLNKLVVVKLNGGLG
TSMGCHGPKSVIPVRNDLTFLDLTVQQIESLNKTYNANVPLVLMNSFNTDEDTEKIVRKY
KGFQVNIYSFNQSGFPRISRDSLLPVARKYEIDDNIEAWYPPGHGDFYESFQKSGLLKQF
INEGREYLFLSNIDNLGATIDLGILNRLLGETDGVCHEFVMEVTDKTRADVKGGTLIQYE
NKLRLLEIAQVPNEHVDEFKSVKTFKFFNTNNIWAKLDAIDRVLNEGSMNMEIIAIGINV
PRSRFLPVKKTSDLLLVMSNLYSLKAGSLVMSPQRMFPTTPLVKLGDNHFSKVKEFLGRF
ANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPPGAILENKIVSGNLRIL
DH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g10441.t6 | CDD | cd00897 | UGPase_euk | 107 | 384 | 1.22645E-179 |
| 10 | g10441.t6 | Coils | Coil | Coil | 24 | 44 | - |
| 8 | g10441.t6 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 31 | 368 | 2.3E-142 |
| 9 | g10441.t6 | Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 369 | 482 | 2.6E-48 |
| 14 | g10441.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - |
| 4 | g10441.t6 | PANTHER | PTHR43511 | - | 56 | 354 | 2.0E-167 |
| 6 | g10441.t6 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 56 | 354 | 2.0E-167 |
| 3 | g10441.t6 | PANTHER | PTHR43511 | - | 355 | 479 | 2.0E-167 |
| 5 | g10441.t6 | PANTHER | PTHR43511:SF4 | UTP–GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | 355 | 479 | 2.0E-167 |
| 12 | g10441.t6 | PIRSF | PIRSF000806 | UDPGP | 8 | 356 | 1.8E-132 |
| 11 | g10441.t6 | PIRSF | PIRSF000806 | UDPGP | 354 | 482 | 1.2E-54 |
| 2 | g10441.t6 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 57 | 354 | 2.5E-128 |
| 1 | g10441.t6 | Pfam | PF01704 | UTP–glucose-1-phosphate uridylyltransferase | 355 | 447 | 7.3E-38 |
| 7 | g10441.t6 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 54 | 455 | 6.0E-81 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006011 | UDP-glucose metabolic process | BP |
| GO:0070569 | uridylyltransferase activity | MF |
| GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed