Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acetyl-coenzyme A transporter 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10445 g10445.t2 TSS g10445.t2 9869118 9869118
chr_1 g10445 g10445.t2 isoform g10445.t2 9869178 9871211
chr_1 g10445 g10445.t2 exon g10445.t2.exon1 9869178 9869445
chr_1 g10445 g10445.t2 cds g10445.t2.CDS1 9869178 9869445
chr_1 g10445 g10445.t2 exon g10445.t2.exon2 9869512 9869768
chr_1 g10445 g10445.t2 cds g10445.t2.CDS2 9869512 9869768
chr_1 g10445 g10445.t2 exon g10445.t2.exon3 9869951 9870610
chr_1 g10445 g10445.t2 cds g10445.t2.CDS3 9869951 9869971
chr_1 g10445 g10445.t2 exon g10445.t2.exon4 9870668 9870713
chr_1 g10445 g10445.t2 exon g10445.t2.exon5 9870778 9871211
chr_1 g10445 g10445.t2 TTS g10445.t2 9871288 9871288

Sequences

>g10445.t2 Gene=g10445 Length=1665
ATGAGTGTTGACAATAAGAAAATTGTTAGGCAAGATCAAGAACACCAATTGACTATTAAA
GAAGAAGAAAAAGAGCAGCAAGAAGAAGAAGAGGAAGAAGAATCTGATTTACGAGGAGAT
TATGGAAATGTGGCAATTTTACTGTTTTTATATATATTGCAAGGAATACCTTTAGGGATC
TCTTCAGCTGTTCGCATTCTTCTCACTAATAGGGGTGTATCATATAAAGAACTTGCAATA
TTGTCATTTGCTAGCTACCCATTTACAATGAAGGTTCTTTGGTCTCCAATTGTTGATGCA
ATTTATTTTAAAAAAATTGGTCGAAGAAAGTCCTGGCTTATTCCCGTTCAACTTATGATC
GGAGGATTTATGATTTTTCTAGCACAAAGAGTGAATGATTGGATGGGTGATAGTAAAGGA
CAAGAGCCTCAAATTATTTTTCTCACAATAGTATTCTTTATGCTTTGGTTTTTAACTGCA
ACTCAGGATATTGCTGTTGATGGCTGGTGTCTTACTATGCTGCAGGATGGTAAAAAATTT
TTTTGATGAAAATGGAACTCAATAATATGTTAAACTTTTAGGTTCATAGGCTATGTTATT
TTGTTAGTTTTTGAATCAAAAGAATTTTGCAACAAATATATTTTTTCGGAACCACGCGAA
AAAGGATTGTTAACATTAGCAGGATTTTTAAACTTTTGGGGAGTTGTATTTCTTAGTACA
ACCATTTTGTTAGCACTTTTTAAAAAGGAAAGATCAGAATTTGAAGATGAACAGTTGAAA
AATAATCCTGACTATGGCATTAAGAAAGCTTATCCTATTTTATGGAAAATAATCACACAC
AAACCTGTCATGAAATTTTCAATTATTCTTCTCACAGTTAAAGCAAGTTTTGCCGCATGT
GATACTATAACGTCTTTAAAACTTATCGAGTATGGAGTGCCAAAAGATCGAATTGCATTA
CTTGCAATCCCTCTTGTGCCAGTTCAGATTGTGCTTCCTTTCATCATCAGTCGATATACA
GCTGGTCCAAAACCTATGCTTTTTTATATAAAAGCTTTTCCATATCGACTCATCATGACT
ATAGTGATTGCAGTTTGGGTTTTTTATACACCGAAAATGATAGTTGGAACTGATTTTCCC
GTTTATTATTATATCGCAATTGTTTCAATTTATATGATTTATCAGATTCCGTTTCGATCG
ATGTACGTTGCTGATATGAGCTTTTTCGCAAAAATATCTGATCCTTTAGTCGGAGGTACC
TATATGACCTTGATGAATACAATAAGCAACTTAGGGGGGTCGTGGATTCAAACTTTCTCC
CTTTGGTTAGTTGATATAATTACATGGAAGAGATGTATTTTTAGTGATAATGAGATACTG
AATGTTCAGAACTCTACTAACATTTCACTTAGTAATAATACTTGCAAAGATAAGATTGAA
AAAGAACAATGTGCGGAATTAGGTGGAAAATGTTTTACTGATATCGATGGTTATTATATA
GAAATTTGCATCAATGTGATTTATGGTATTATTTGGTTTTATTTCGGTCGAAAACTTATC
ATACATTTACAGAATTTACCCTCAAAAGATTGGTATATTTTGACTAAAAAAACAACAAAT
AACAAAGACGATAAAGAAAGTATTCCATTAAAGAAGATTCCATAG

>g10445.t2 Gene=g10445 Length=181
MSVDNKKIVRQDQEHQLTIKEEEKEQQEEEEEEESDLRGDYGNVAILLFLYILQGIPLGI
SSAVRILLTNRGVSYKELAILSFASYPFTMKVLWSPIVDAIYFKKIGRRKSWLIPVQLMI
GGFMIFLAQRVNDWMGDSKGQEPQIIFLTIVFFMLWFLTATQDIAVDGWCLTMLQDGKKF
F

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10445.t2 Coils Coil Coil 10 40 -
8 g10445.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 37 -
9 g10445.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 23 -
2 g10445.t2 PANTHER PTHR12778:SF9 ACETYL-COENZYME A TRANSPORTER 1 30 176 8.8E-59
3 g10445.t2 PANTHER PTHR12778 SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED 30 176 8.8E-59
1 g10445.t2 Pfam PF13000 Acetyl-coenzyme A transporter 1 45 175 4.1E-42
14 g10445.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 43 -
17 g10445.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 44 68 -
12 g10445.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 69 111 -
16 g10445.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 112 131 -
13 g10445.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 132 142 -
15 g10445.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 143 161 -
11 g10445.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 162 181 -
6 g10445.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 47 69 -
5 g10445.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 79 98 -
7 g10445.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 111 128 -
4 g10445.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 143 160 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008521 acetyl-CoA transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values