Gene loci information

Transcript annotation

  • This transcript has been annotated as Acetyl-coenzyme A transporter 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10446 g10446.t2 TSS g10446.t2 9871504 9871504
chr_1 g10446 g10446.t2 isoform g10446.t2 9871612 9873334
chr_1 g10446 g10446.t2 exon g10446.t2.exon1 9871612 9871889
chr_1 g10446 g10446.t2 exon g10446.t2.exon2 9872009 9873334
chr_1 g10446 g10446.t2 cds g10446.t2.CDS1 9872087 9873334
chr_1 g10446 g10446.t2 TTS g10446.t2 9873540 9873540

Sequences

>g10446.t2 Gene=g10446 Length=1604
ATGACGATACGAAAAAGAGGTGAAAGTTCGGACAGAAAGAAGTTGCTAACAAATCATCAT
GAAAGTGGCGAAGAGGAGGACATTCATGAACATTCAGATTTGCGAGGAGATTATTTGAAC
ATCGCATTACTATTTTTCCTTTATTTACTGCAAGGAATTCCACTTGGAATTGGTCAAGCA
ATTCCTATGCTTCTTCAGAATAGAGGAGCATCATATAAAGAACAAGCAGGTTTGTTCTTA
TAAAATTTTCCTTGAAAATATGTTGATATTTTTCTATTGTAGATAGTATTTATTTTAAAG
CAATTGGAAGACGAAAGAGTTGGATGATCCCTACGCAGTATTTGATAGGAATTTTTATGT
TAATTCTGTCACAACATGTGGGAAGTTGGCTCGGAGATGGTCATGAATCAATGCCTCGAG
TAGCTGTGATAACATTGATTTTCTTTTCATTAAATTTTCTCGCTGCAACACAAGATATTG
CAGTAGATGGTTGGGCTTTGTCAATGCTGAAAAAGAGAAATGTGGCTCATGCATCGACAT
GCAATTCAGTTGGACAGACAGCTGGCTATTTCCTAGGATATGTAGTATTCATGGCATTTG
AATCAAAAGAATTTTGTAACAAATATATCTTTTCGGAGCCACGTGAACAAGGATTGGTGA
CTCTTTCTGGTTTTCTTTATTTCTGGGGTGTAGTATTTTTGACTACAACCACCATCATTG
GATTGCTCAAGAAAGAAAAGAAAGAGACTCAAGAGCAACTTGAAGAACATCCTGATTTGG
GTATAAAAGAGACTTATACAATGTTGTGGAAAATTGTAACTATGAAACCAGTAATGTTAT
TGGCTGTTTTACTTTTAACTGTTAAAGTCAGTTTTTCTGCTTGTGATGCAGTCACCTCAT
TAAAATTGATTGATCATGGTATACCGAAAGAAAAATTGGCTATGTTGGCTATCCCACTCG
TTCCACTACAACTTCTTTTACCTCTCATAATGAGCAAACACATCACAGGCAAATATCCAA
TGAACTTTTACATCAAGGCAATTCCATTTAGATTATTGCTCACACTTGTAACTGCTGCAA
TCGTCTGGGCTACACCGCTCATCATAAGAGAACAAACAGATGACATTCCGTACTACTATT
ATGGTCTTTTACTCGTAACGTACTCTTTTTATCAAATATTTTTGTATGCAATGTTTTGCT
CTGCAATGAGTTTCTTTGCAAAAATTTCTGATCCTAAAATTGGCGGTACATATATGACTT
TATTAAATACCCTGCATAATTTAGGAGGAAATTGGCCCAATACAATGGTCTTATGGTTGA
TTGATTTCATAACATGGAAATCATGCGTTTCTGATGGAAATCAAAATAATTTTTCAGCGC
CAAAATTAAACGATAATGCATGTTTGACACATCAAGAACAAGAAGACTGCTTTAAAATTG
GTGGTAAATGCAGAGTCGATATTGATGGTTATTATATCGAAGTCATTCTCTGTCTGATTT
ATGGAATTTTTTGGTATAAATGGGGCAGATCAAAGATCAATGAACTACAGAAATTACCAG
TTAAAGCATGGCATGTTTTTCAATCAAAGACAAAATCGAGTTAG

>g10446.t2 Gene=g10446 Length=415
MLILSQHVGSWLGDGHESMPRVAVITLIFFSLNFLAATQDIAVDGWALSMLKKRNVAHAS
TCNSVGQTAGYFLGYVVFMAFESKEFCNKYIFSEPREQGLVTLSGFLYFWGVVFLTTTTI
IGLLKKEKKETQEQLEEHPDLGIKETYTMLWKIVTMKPVMLLAVLLLTVKVSFSACDAVT
SLKLIDHGIPKEKLAMLAIPLVPLQLLLPLIMSKHITGKYPMNFYIKAIPFRLLLTLVTA
AIVWATPLIIREQTDDIPYYYYGLLLVTYSFYQIFLYAMFCSAMSFFAKISDPKIGGTYM
TLLNTLHNLGGNWPNTMVLWLIDFITWKSCVSDGNQNNFSAPKLNDNACLTHQEQEDCFK
IGGKCRVDIDGYYIEVILCLIYGIFWYKWGRSKINELQKLPVKAWHVFQSKTKSS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g10446.t2 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 18 332 1.5E-10
4 g10446.t2 PANTHER PTHR12778:SF9 ACETYL-COENZYME A TRANSPORTER 1 1 409 2.9E-142
5 g10446.t2 PANTHER PTHR12778 SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED 1 409 2.9E-142
3 g10446.t2 Pfam PF13000 Acetyl-coenzyme A transporter 1 21 132 1.3E-37
1 g10446.t2 Pfam PF13000 Acetyl-coenzyme A transporter 1 135 218 1.2E-11
2 g10446.t2 Pfam PF13000 Acetyl-coenzyme A transporter 1 250 407 8.6E-34
23 g10446.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 21 -
31 g10446.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 22 43 -
19 g10446.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 44 63 -
26 g10446.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 64 81 -
22 g10446.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 82 100 -
27 g10446.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 101 124 -
18 g10446.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 125 158 -
25 g10446.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 159 182 -
21 g10446.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 183 193 -
32 g10446.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 194 212 -
17 g10446.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 213 223 -
30 g10446.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 224 247 -
24 g10446.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 248 258 -
28 g10446.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 259 280 -
16 g10446.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 281 371 -
29 g10446.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 372 389 -
20 g10446.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 390 415 -
14 g10446.t2 SUPERFAMILY SSF103473 MFS general substrate transporter 23 392 7.98E-16
10 g10446.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 43 -
6 g10446.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 56 78 -
13 g10446.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 99 121 -
9 g10446.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 159 181 -
8 g10446.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 194 213 -
11 g10446.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 228 250 -
7 g10446.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 257 279 -
12 g10446.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 371 390 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008521 acetyl-CoA transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values