Gene loci information

Transcript annotation

  • This transcript has been annotated as Acetyl-coenzyme A transporter 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10446 g10446.t3 TSS g10446.t3 9871504 9871504
chr_1 g10446 g10446.t3 isoform g10446.t3 9871612 9873334
chr_1 g10446 g10446.t3 exon g10446.t3.exon1 9871612 9871844
chr_1 g10446 g10446.t3 exon g10446.t3.exon2 9872009 9872975
chr_1 g10446 g10446.t3 cds g10446.t3.CDS1 9872087 9872975
chr_1 g10446 g10446.t3 exon g10446.t3.exon3 9873305 9873334
chr_1 g10446 g10446.t3 cds g10446.t3.CDS2 9873305 9873333
chr_1 g10446 g10446.t3 TTS g10446.t3 9873540 9873540

Sequences

>g10446.t3 Gene=g10446 Length=1230
ATGACGATACGAAAAAGAGGTGAAAGTTCGGACAGAAAGAAGTTGCTAACAAATCATCAT
GAAAGTGGCGAAGAGGAGGACATTCATGAACATTCAGATTTGCGAGGAGATTATTTGAAC
ATCGCATTACTATTTTTCCTTTATTTACTGCAAGGAATTCCACTTGGAATTGGTCAAGCA
ATTCCTATGCTTCTTCAGAATAGAGGAGCATCATATAAAGAACAAGCAGGTTTGTAGATA
GTATTTATTTTAAAGCAATTGGAAGACGAAAGAGTTGGATGATCCCTACGCAGTATTTGA
TAGGAATTTTTATGTTAATTCTGTCACAACATGTGGGAAGTTGGCTCGGAGATGGTCATG
AATCAATGCCTCGAGTAGCTGTGATAACATTGATTTTCTTTTCATTAAATTTTCTCGCTG
CAACACAAGATATTGCAGTAGATGGTTGGGCTTTGTCAATGCTGAAAAAGAGAAATGTGG
CTCATGCATCGACATGCAATTCAGTTGGACAGACAGCTGGCTATTTCCTAGGATATGTAG
TATTCATGGCATTTGAATCAAAAGAATTTTGTAACAAATATATCTTTTCGGAGCCACGTG
AACAAGGATTGGTGACTCTTTCTGGTTTTCTTTATTTCTGGGGTGTAGTATTTTTGACTA
CAACCACCATCATTGGATTGCTCAAGAAAGAAAAGAAAGAGACTCAAGAGCAACTTGAAG
AACATCCTGATTTGGGTATAAAAGAGACTTATACAATGTTGTGGAAAATTGTAACTATGA
AACCAGTAATGTTATTGGCTGTTTTACTTTTAACTGTTAAAGTCAGTTTTTCTGCTTGTG
ATGCAGTCACCTCATTAAAATTGATTGATCATGGTATACCGAAAGAAAAATTGGCTATGT
TGGCTATCCCACTCGTTCCACTACAACTTCTTTTACCTCTCATAATGAGCAAACACATCA
CAGGCAAATATCCAATGAACTTTTACATCAAGGCAATTCCATTTAGATTATTGCTCACAC
TTGTAACTGCTGCAATCGTCTGGGCTACACCGCTCATCATAAGAGAACAAACAGATGACA
TTCCGTACTACTATTATGGTCTTTTACTCGTAACGTACTCTTTTTATCAAATATTTTTGT
ATGCAATGTTTTGCTCTGCAATGAGTTTCTTTGCAAAAATTTCTGATCCTAAAATTGGCG
GTTTTTCAATCAAAGACAAAATCGAGTTAG

>g10446.t3 Gene=g10446 Length=306
MLILSQHVGSWLGDGHESMPRVAVITLIFFSLNFLAATQDIAVDGWALSMLKKRNVAHAS
TCNSVGQTAGYFLGYVVFMAFESKEFCNKYIFSEPREQGLVTLSGFLYFWGVVFLTTTTI
IGLLKKEKKETQEQLEEHPDLGIKETYTMLWKIVTMKPVMLLAVLLLTVKVSFSACDAVT
SLKLIDHGIPKEKLAMLAIPLVPLQLLLPLIMSKHITGKYPMNFYIKAIPFRLLLTLVTA
AIVWATPLIIREQTDDIPYYYYGLLLVTYSFYQIFLYAMFCSAMSFFAKISDPKIGGFSI
KDKIEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g10446.t3 PANTHER PTHR12778:SF9 ACETYL-COENZYME A TRANSPORTER 1 1 297 1.6E-98
4 g10446.t3 PANTHER PTHR12778 SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED 1 297 1.6E-98
2 g10446.t3 Pfam PF13000 Acetyl-coenzyme A transporter 1 21 132 6.2E-38
1 g10446.t3 Pfam PF13000 Acetyl-coenzyme A transporter 1 134 218 5.4E-12
19 g10446.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 21 -
27 g10446.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 22 43 -
16 g10446.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 44 63 -
22 g10446.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 64 81 -
18 g10446.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 82 100 -
23 g10446.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 101 124 -
14 g10446.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 125 158 -
21 g10446.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 159 182 -
17 g10446.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 183 193 -
26 g10446.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 194 212 -
13 g10446.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 213 223 -
24 g10446.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 224 247 -
20 g10446.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 248 258 -
25 g10446.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 259 280 -
15 g10446.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 281 306 -
12 g10446.t3 SUPERFAMILY SSF103473 MFS general substrate transporter 22 297 6.8E-9
6 g10446.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 38 -
8 g10446.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 59 81 -
7 g10446.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 101 123 -
10 g10446.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 159 181 -
11 g10446.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 194 216 -
5 g10446.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 228 250 -
9 g10446.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 265 287 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008521 acetyl-CoA transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values