Gene loci information

Transcript annotation

  • This transcript has been annotated as Acetyl-coenzyme A transporter 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10446 g10446.t4 TSS g10446.t4 9871504 9871504
chr_1 g10446 g10446.t4 isoform g10446.t4 9872012 9873334
chr_1 g10446 g10446.t4 exon g10446.t4.exon1 9872012 9872678
chr_1 g10446 g10446.t4 cds g10446.t4.CDS1 9872054 9872678
chr_1 g10446 g10446.t4 exon g10446.t4.exon2 9872782 9873334
chr_1 g10446 g10446.t4 cds g10446.t4.CDS2 9872782 9872801
chr_1 g10446 g10446.t4 TTS g10446.t4 9873540 9873540

Sequences

>g10446.t4 Gene=g10446 Length=1220
GATAGTATTTATTTTAAAGCAATTGGAAGACGAAAGAGTTGGATGATCCCTACGCAGTAT
TTGATAGGAATTTTTATGTTAATTCTGTCACAACATGTGGGAAGTTGGCTCGGAGATGGT
CATGAATCAATGCCTCGAGTAGCTGTGATAACATTGATTTTCTTTTCATTAAATTTTCTC
GCTGCAACACAAGATATTGCAGTAGATGGTTGGGCTTTGTCAATGCTGAAAAAGAGAAAT
GTGGCTCATGCATCGACATGCAATTCAGTTGGACAGACAGCTGGCTATTTCCTAGGATAT
GTAGTATTCATGGCATTTGAATCAAAAGAATTTTGTAACAAATATATCTTTTCGGAGCCA
CGTGAACAAGGATTGGTGACTCTTTCTGGTTTTCTTTATTTCTGGGGTGTAGTATTTTTG
ACTACAACCACCATCATTGGATTGCTCAAGAAAGAAAAGAAAGAGACTCAAGAGCAACTT
GAAGAACATCCTGATTTGGGTATAAAAGAGACTTATACAATGTTGTGGAAAATTGTAACT
ATGAAACCAGTAATGTTATTGGCTGTTTTACTTTTAACTGTTAAAGTCAGTTTTTCTGCT
TGTGATGCAGTCACCTCATTAAAATTGATTGATCATGGTATACCGAAAGAAAAATTGGCT
ATGTTGGATTATTGCTCACACTTGTAACTGCTGCAATCGTCTGGGCTACACCGCTCATCA
TAAGAGAACAAACAGATGACATTCCGTACTACTATTATGGTCTTTTACTCGTAACGTACT
CTTTTTATCAAATATTTTTGTATGCAATGTTTTGCTCTGCAATGAGTTTCTTTGCAAAAA
TTTCTGATCCTAAAATTGGCGGTACATATATGACTTTATTAAATACCCTGCATAATTTAG
GAGGAAATTGGCCCAATACAATGGTCTTATGGTTGATTGATTTCATAACATGGAAATCAT
GCGTTTCTGATGGAAATCAAAATAATTTTTCAGCGCCAAAATTAAACGATAATGCATGTT
TGACACATCAAGAACAAGAAGACTGCTTTAAAATTGGTGGTAAATGCAGAGTCGATATTG
ATGGTTATTATATCGAAGTCATTCTCTGTCTGATTTATGGAATTTTTTGGTATAAATGGG
GCAGATCAAAGATCAATGAACTACAGAAATTACCAGTTAAAGCATGGCATGTTTTTCAAT
CAAAGACAAAATCGAGTTAG

>g10446.t4 Gene=g10446 Length=214
MIPTQYLIGIFMLILSQHVGSWLGDGHESMPRVAVITLIFFSLNFLAATQDIAVDGWALS
MLKKRNVAHASTCNSVGQTAGYFLGYVVFMAFESKEFCNKYIFSEPREQGLVTLSGFLYF
WGVVFLTTTTIIGLLKKEKKETQEQLEEHPDLGIKETYTMLWKIVTMKPVMLLAVLLLTV
KVSFSACDAVTSLKLIDHGIPKEKLAMLDYCSHL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g10446.t4 PANTHER PTHR12778:SF9 ACETYL-COENZYME A TRANSPORTER 1 1 209 3.6E-75
4 g10446.t4 PANTHER PTHR12778 SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED 1 209 3.6E-75
2 g10446.t4 Pfam PF13000 Acetyl-coenzyme A transporter 1 2 143 4.7E-39
1 g10446.t4 Pfam PF13000 Acetyl-coenzyme A transporter 1 144 207 5.1E-10
14 g10446.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
19 g10446.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 24 -
11 g10446.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 25 32 -
18 g10446.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 33 53 -
13 g10446.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 54 115 -
17 g10446.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 116 135 -
12 g10446.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 136 169 -
16 g10446.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 170 191 -
15 g10446.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 192 214 -
10 g10446.t4 SUPERFAMILY SSF103473 MFS general substrate transporter 8 203 6.8E-7
8 g10446.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 24 -
7 g10446.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 48 -
6 g10446.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 70 92 -
5 g10446.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 112 134 -
9 g10446.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 170 192 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008521 acetyl-CoA transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed