Gene loci information

Transcript annotation

  • This transcript has been annotated as Acetyl-coenzyme A transporter 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10446 g10446.t5 TSS g10446.t5 9871504 9871504
chr_1 g10446 g10446.t5 isoform g10446.t5 9872012 9873606
chr_1 g10446 g10446.t5 exon g10446.t5.exon1 9872012 9873606
chr_1 g10446 g10446.t5 cds g10446.t5.CDS1 9872054 9873334
chr_1 g10446 g10446.t5 TTS g10446.t5 NA NA

Sequences

>g10446.t5 Gene=g10446 Length=1595
GATAGTATTTATTTTAAAGCAATTGGAAGACGAAAGAGTTGGATGATCCCTACGCAGTAT
TTGATAGGAATTTTTATGTTAATTCTGTCACAACATGTGGGAAGTTGGCTCGGAGATGGT
CATGAATCAATGCCTCGAGTAGCTGTGATAACATTGATTTTCTTTTCATTAAATTTTCTC
GCTGCAACACAAGATATTGCAGTAGATGGTTGGGCTTTGTCAATGCTGAAAAAGAGAAAT
GTGGCTCATGCATCGACATGCAATTCAGTTGGACAGACAGCTGGCTATTTCCTAGGATAT
GTAGTATTCATGGCATTTGAATCAAAAGAATTTTGTAACAAATATATCTTTTCGGAGCCA
CGTGAACAAGGATTGGTGACTCTTTCTGGTTTTCTTTATTTCTGGGGTGTAGTATTTTTG
ACTACAACCACCATCATTGGATTGCTCAAGAAAGAAAAGAAAGAGACTCAAGAGCAACTT
GAAGAACATCCTGATTTGGGTATAAAAGAGACTTATACAATGTTGTGGAAAATTGTAACT
ATGAAACCAGTAATGTTATTGGCTGTTTTACTTTTAACTGTTAAAGTCAGTTTTTCTGCT
TGTGATGCAGTCACCTCATTAAAATTGATTGATCATGGTATACCGAAAGAAAAATTGGCT
ATGTTGGCTATCCCACTCGTTCCACTACAACTTCTTTTACCTCTCATAATGAGCAAACAC
ATCACAGGCAAATATCCAATGAACTTTTACATCAAGGCAATTCCATTTAGATTATTGCTC
ACACTTGTAACTGCTGCAATCGTCTGGGCTACACCGCTCATCATAAGAGAACAAACAGAT
GACATTCCGTACTACTATTATGGTCTTTTACTCGTAACGTACTCTTTTTATCAAATATTT
TTGTATGCAATGTTTTGCTCTGCAATGAGTTTCTTTGCAAAAATTTCTGATCCTAAAATT
GGCGGTACATATATGACTTTATTAAATACCCTGCATAATTTAGGAGGAAATTGGCCCAAT
ACAATGGTCTTATGGTTGATTGATTTCATAACATGGAAATCATGCGTTTCTGATGGAAAT
CAAAATAATTTTTCAGCGCCAAAATTAAACGATAATGCATGTTTGACACATCAAGAACAA
GAAGACTGCTTTAAAATTGGTGGTAAATGCAGAGTCGATATTGATGGTTATTATATCGAA
GTCATTCTCTGTCTGATTTATGGAATTTTTTGGTATAAATGGGGCAGATCAAAGATCAAT
GAACTACAGAAATTACCAGTTAAAGCATGGCATGTTTTTCAATCAAAGACAAAATCGAGT
TAGCAATTAGTTTGACTGTAGCTTCTTTGCTTAACTAGAGAAAATTTTATTTTTTTGTTT
AATTAAAACTTACAAATTTTTAAATAGTACATATTTAGAATTGCATTCATCTCAAATTTA
ATTTGAAATATAACCCAACATTCTATTTTTATTTGTTATCAATATATTTTATTTGTGGTA
AAATAAAAAAAAAACATTTTTTTGCACATTATAAAAGTGTTTATCCATCACCTGATTTTG
TCTATCACCAGTAAAAAATTATGTATAATTTACTT

>g10446.t5 Gene=g10446 Length=426
MIPTQYLIGIFMLILSQHVGSWLGDGHESMPRVAVITLIFFSLNFLAATQDIAVDGWALS
MLKKRNVAHASTCNSVGQTAGYFLGYVVFMAFESKEFCNKYIFSEPREQGLVTLSGFLYF
WGVVFLTTTTIIGLLKKEKKETQEQLEEHPDLGIKETYTMLWKIVTMKPVMLLAVLLLTV
KVSFSACDAVTSLKLIDHGIPKEKLAMLAIPLVPLQLLLPLIMSKHITGKYPMNFYIKAI
PFRLLLTLVTAAIVWATPLIIREQTDDIPYYYYGLLLVTYSFYQIFLYAMFCSAMSFFAK
ISDPKIGGTYMTLLNTLHNLGGNWPNTMVLWLIDFITWKSCVSDGNQNNFSAPKLNDNAC
LTHQEQEDCFKIGGKCRVDIDGYYIEVILCLIYGIFWYKWGRSKINELQKLPVKAWHVFQ
SKTKSS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g10446.t5 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 5 343 1.8E-11
3 g10446.t5 PANTHER PTHR12778:SF9 ACETYL-COENZYME A TRANSPORTER 1 1 420 4.5E-148
4 g10446.t5 PANTHER PTHR12778 SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED 1 420 4.5E-148
2 g10446.t5 Pfam PF13000 Acetyl-coenzyme A transporter 1 2 228 3.8E-47
1 g10446.t5 Pfam PF13000 Acetyl-coenzyme A transporter 1 262 418 9.0E-34
23 g10446.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
32 g10446.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 24 -
16 g10446.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 25 32 -
30 g10446.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 33 53 -
20 g10446.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 54 115 -
26 g10446.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 116 135 -
17 g10446.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 136 169 -
27 g10446.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 170 193 -
21 g10446.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 194 204 -
28 g10446.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 205 223 -
18 g10446.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 224 234 -
31 g10446.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 235 258 -
22 g10446.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 259 269 -
29 g10446.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 270 291 -
19 g10446.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 292 382 -
25 g10446.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 383 400 -
24 g10446.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 401 426 -
14 g10446.t5 SUPERFAMILY SSF103473 MFS general substrate transporter 8 403 5.76E-16
10 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 26 -
11 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 33 52 -
9 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 67 89 -
8 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 110 132 -
12 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 170 192 -
7 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 205 224 -
6 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 239 261 -
13 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 268 290 -
5 g10446.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 382 401 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008521 acetyl-CoA transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values