General information for g10450.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable importin subunit beta-4.
Parent gene
- The parent gene g10450 is located on chr_1: 9881588..9882368 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10450 | g10450.t5 | isoform | g10450.t5 | 9881588 | 9882368 |
| chr_1 | g10450 | g10450.t5 | exon | g10450.t5.exon1 | 9881588 | 9881872 |
| chr_1 | g10450 | g10450.t5 | cds | g10450.t5.CDS1 | 9881691 | 9881872 |
| chr_1 | g10450 | g10450.t5 | exon | g10450.t5.exon2 | 9881942 | 9882368 |
| chr_1 | g10450 | g10450.t5 | cds | g10450.t5.CDS2 | 9881942 | 9882368 |
| chr_1 | g10450 | g10450.t5 | TTS | g10450.t5 | 9882623 | 9882623 |
| chr_1 | g10450 | g10450.t5 | TSS | g10450.t5 | NA | NA |
Sequences
>g10450.t5 Gene=g10450 Length=712
TGTGAGAATATTTTACTCGAATATTTTAAATTATTTTTAATTAAAATTTTATTTATAGCA
AAAATCAAAGAGTAGAGATGAACTTTCTCAATCACAACGTGCTATGGCAGTAGGAATAGT
TTCAGAATGTTTTGAGCCACTAGGTGAATTTTCAGCAAGATATTTCGACGCATTGATTCC
TCTCTTTCTCGAACTGATAAATGATCAGAGCGATGATGAAGTGAGAAATAATGCAGTGTA
CGCGATTGGGGAATTAAGCAAACACAGTGGACAAGCTAGTTTTAAAGCATATCCACAAAT
TTTAGCAGCATTATCAAATTTAGTTTCAAAAGAAAGTCATGGTGGAATTCTCGATAATAT
TTGTGGTACACTCGCTCGATTGATTATTACAAATAGCACATTGGTTCCTTTAAAAGATGT
TCTCCCAGTTTTTATATCTTATCTTCCACTTCGACAAGACTATGTTGAAAATGAGCACGT
ATTTAAATCACTCGAATTATTATATCGACAAGGAAATGAAGTTTTGTTGCAATTCCTTGA
GCGCGTGATTCTTACAGCATTAACTGTTTTACAAAAAAATCAATATAACAACGATGCAGT
ACGAGAGCACATTTTTCAATTTGTTAAACAAGTTAGGATAGACTTTCCGGAAAAATTTAA
TAATGCTATCAATGTTGATGCAGAAATTTCAAGTTTTGTACAAACATTGTAA
>g10450.t5 Gene=g10450 Length=202
MAVGIVSECFEPLGEFSARYFDALIPLFLELINDQSDDEVRNNAVYAIGELSKHSGQASF
KAYPQILAALSNLVSKESHGGILDNICGTLARLIITNSTLVPLKDVLPVFISYLPLRQDY
VENEHVFKSLELLYRQGNEVLLQFLERVILTALTVLQKNQYNNDAVREHIFQFVKQVRID
FPEKFNNAINVDAEISSFVQTL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10450.t5 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 199 | 0.000000 |
| 2 | g10450.t5 | PANTHER | PTHR10527:SF6 | IMPORTIN-4 | 1 | 177 | 0.000000 |
| 3 | g10450.t5 | PANTHER | PTHR10527 | IMPORTIN BETA | 1 | 177 | 0.000000 |
| 1 | g10450.t5 | Pfam | PF02985 | HEAT repeat | 24 | 54 | 0.000016 |
| 6 | g10450.t5 | ProSiteProfiles | PS50077 | HEAT repeat profile. | 24 | 63 | 11.838000 |
| 4 | g10450.t5 | SUPERFAMILY | SSF48371 | ARM repeat | 2 | 184 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0006606 | protein import into nucleus | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
