General information for g10455.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Acetyl-coenzyme A transporter 1.
Parent gene
- The parent gene g10455 is located on chr_1: 9904610..9905810 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10455 | g10455.t1 | TTS | g10455.t1 | 9903991 | 9903991 |
| chr_1 | g10455 | g10455.t1 | isoform | g10455.t1 | 9903995 | 9905810 |
| chr_1 | g10455 | g10455.t1 | exon | g10455.t1.exon1 | 9903995 | 9904413 |
| chr_1 | g10455 | g10455.t1 | cds | g10455.t1.CDS1 | 9903995 | 9904413 |
| chr_1 | g10455 | g10455.t1 | exon | g10455.t1.exon2 | 9904486 | 9904555 |
| chr_1 | g10455 | g10455.t1 | cds | g10455.t1.CDS2 | 9904486 | 9904555 |
| chr_1 | g10455 | g10455.t1 | exon | g10455.t1.exon3 | 9904610 | 9905529 |
| chr_1 | g10455 | g10455.t1 | cds | g10455.t1.CDS3 | 9904610 | 9905529 |
| chr_1 | g10455 | g10455.t1 | exon | g10455.t1.exon4 | 9905582 | 9905810 |
| chr_1 | g10455 | g10455.t1 | cds | g10455.t1.CDS4 | 9905582 | 9905810 |
| chr_1 | g10455 | g10455.t1 | TSS | g10455.t1 | 9905839 | 9905839 |
Sequences
>g10455.t1 Gene=g10455 Length=1638
ATGAATAGAAATAGTAGTGAAAATTTTGAAATTGAACAAAATTCGAGTAACGAAGAAGAG
AAGCCAAATTTAAAGGGTGATTTTAAGAATGTTGTACTTCTTGTGGTATTATACATTTTT
CAAAGCATCCCACTTGGACTTGTTACTTCTGTTCCAATTTTAATGCAAAATAGAGGTGCA
ACATATAAAGATCAAGCCATTTTTACAATTGCCTATTATCCATTTTCATTAAAAATTTTA
TGGGCGCCAATTGTCGATTCACTATATTTTAAACGAATTGGTAGAAGAAAAACTTGGCTT
GTTCCCTCTCAATTTATGATTGCTTTATCGATGTTATATTCATCATTTTATGTGAATGAA
TGGCTTGGAAGTGCTGAAAAACCACCAAAAATTTTAATTCTTACTTCAGTATTTTTTCTA
ATGAGAGTCTTTGCTGCAACTCAAGATGTTGCCGTTGATGGATTGGCATTATGTCTTTTG
AAAAAGAGAAATATTGGACATGTTGCAACTTGTGAAATGATTGGAATAAGTTGTGGTTGG
TGTATAGGTTACGTTGTATTGCTAGTTCTTGAATCAAGTGAATTTAGCAACAGTTTCATA
TTTTCTGAACCAAGAAATGAAGGACTAATCACACTTGGAGGATTTTTAAAGTTTTGGGGA
ATAGCATTTTTAGTTTTTACGATTCTTATTGCATTTTTCAAACATGAAAATTCCGAAACT
GATGAAAAATTGGAAGAACATCCTGATTATGGAGTTACTAAAGCATATCCAACATTATGG
AAAATTCTTAAACTCAAACCCATCATAAGATTTTCATTATTTATGCTAACAGTTAAAGTT
AGTTTTTCAGCTGTTGATAGTGTAACATCTCTTAAACTCATTGAATATGGTGTACCAAAA
GATAAGATAGCATTTTTAGCTATACCCGTTTTACCAATTCAAATAATTCTTCCTTTTATC
ATCAGTCGATTCACTGCAGGAAAATATCCGATGGATTTTTATATTAAGGCATTTAGAGTT
CGTCTTGCTATGTCTATTCTCATGGTAGCTTACGTATTTTTAACATCCAAAATAGTTAAT
GGCAAAAAATCCAATGAAATTTCAATTTGGTATTTTATTGGACTTGTTATAGTTTACCTA
ATGTATCATATACCATTTCGAGCAATGACTATCGCAGACATGAGTTTTTTTGCTCGAGTG
AGTGATCCTCTTATCGGAGGAACTTATATGACACTTTTAAATACTATTAATAATTTTGGA
ACGAAATGGTCACAAACATTATTCCTTTGGCTTGTTGATATCATTTCATGGAAACATTGT
ATTCAAGACAATCATTTCAACAATTCATTAATAATTTCATTATCAAATAATAAATGTGCA
AATAAGGAAGAAAGAGATCTCTGCATTAAAGCTGGAGGAAAATGTTTAACTGATATTGAT
GGTTATTATATCGAATTTATAATCAATTTAATATATGGTATTGGATTTTATGTCATTGGA
AAAAGAATAATTGAATATTTAGAAAAATTACCTATTGATGATTGGCACGTGCTCGCAAAA
GAACATGAAAGAGTTAAAGAAAATGAAAATTCATCACAAAGGGAAGAGAAAATTGCATTA
AATAAAGATGAGATATAA
>g10455.t1 Gene=g10455 Length=545
MNRNSSENFEIEQNSSNEEEKPNLKGDFKNVVLLVVLYIFQSIPLGLVTSVPILMQNRGA
TYKDQAIFTIAYYPFSLKILWAPIVDSLYFKRIGRRKTWLVPSQFMIALSMLYSSFYVNE
WLGSAEKPPKILILTSVFFLMRVFAATQDVAVDGLALCLLKKRNIGHVATCEMIGISCGW
CIGYVVLLVLESSEFSNSFIFSEPRNEGLITLGGFLKFWGIAFLVFTILIAFFKHENSET
DEKLEEHPDYGVTKAYPTLWKILKLKPIIRFSLFMLTVKVSFSAVDSVTSLKLIEYGVPK
DKIAFLAIPVLPIQIILPFIISRFTAGKYPMDFYIKAFRVRLAMSILMVAYVFLTSKIVN
GKKSNEISIWYFIGLVIVYLMYHIPFRAMTIADMSFFARVSDPLIGGTYMTLLNTINNFG
TKWSQTLFLWLVDIISWKHCIQDNHFNNSLIISLSNNKCANKEERDLCIKAGGKCLTDID
GYYIEFIINLIYGIGFYVIGKRIIEYLEKLPIDDWHVLAKEHERVKENENSSQREEKIAL
NKDEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 19 | g10455.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 66 | 441 | 3.3E-13 |
| 17 | g10455.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - |
| 18 | g10455.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 545 | - |
| 4 | g10455.t1 | PANTHER | PTHR12778:SF9 | ACETYL-COENZYME A TRANSPORTER 1 | 17 | 521 | 7.9E-164 |
| 5 | g10455.t1 | PANTHER | PTHR12778 | SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED | 17 | 521 | 7.9E-164 |
| 2 | g10455.t1 | Pfam | PF13000 | Acetyl-coenzyme A transporter 1 | 31 | 241 | 6.0E-59 |
| 3 | g10455.t1 | Pfam | PF13000 | Acetyl-coenzyme A transporter 1 | 247 | 334 | 1.1E-11 |
| 1 | g10455.t1 | Pfam | PF13000 | Acetyl-coenzyme A transporter 1 | 356 | 517 | 1.0E-27 |
| 21 | g10455.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 30 | - |
| 34 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 54 | - |
| 30 | g10455.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 55 | 65 | - |
| 39 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 66 | 90 | - |
| 26 | g10455.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 91 | 98 | - |
| 43 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 99 | 119 | - |
| 29 | g10455.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 120 | 130 | - |
| 40 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 160 | - |
| 20 | g10455.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 161 | 171 | - |
| 36 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 172 | 190 | - |
| 28 | g10455.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 191 | 209 | - |
| 38 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 210 | 233 | - |
| 25 | g10455.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 234 | 270 | - |
| 37 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 271 | 291 | - |
| 27 | g10455.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 292 | 302 | - |
| 44 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 303 | 326 | - |
| 23 | g10455.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 327 | 337 | - |
| 42 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 338 | 355 | - |
| 32 | g10455.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 356 | 366 | - |
| 41 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 367 | 384 | - |
| 24 | g10455.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 385 | 395 | - |
| 33 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 396 | 416 | - |
| 31 | g10455.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 417 | 481 | - |
| 35 | g10455.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 482 | 500 | - |
| 22 | g10455.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 501 | 545 | - |
| 16 | g10455.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 1 | 439 | 3.27E-22 |
| 11 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 53 | - |
| 12 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 90 | - |
| 13 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 99 | 118 | - |
| 7 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 160 | - |
| 14 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 173 | 190 | - |
| 10 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 210 | 232 | - |
| 8 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 303 | 322 | - |
| 15 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 337 | 354 | - |
| 6 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 367 | 386 | - |
| 9 | g10455.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 481 | 500 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0008521 | acetyl-CoA transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K03372 (MFS transporter, PAT family, solute carrier family 33 (acetyl-CoA transportor), member 1 [EC:2.3.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
