Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acetyl-coenzyme A transporter 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10455 g10455.t2 TTS g10455.t2 9903991 9903991
chr_1 g10455 g10455.t2 isoform g10455.t2 9903995 9905221
chr_1 g10455 g10455.t2 exon g10455.t2.exon1 9903995 9904413
chr_1 g10455 g10455.t2 cds g10455.t2.CDS1 9903995 9904413
chr_1 g10455 g10455.t2 exon g10455.t2.exon2 9904486 9904555
chr_1 g10455 g10455.t2 cds g10455.t2.CDS2 9904486 9904555
chr_1 g10455 g10455.t2 exon g10455.t2.exon3 9904610 9905221
chr_1 g10455 g10455.t2 cds g10455.t2.CDS3 9904610 9904936
chr_1 g10455 g10455.t2 TSS g10455.t2 9905839 9905839

Sequences

>g10455.t2 Gene=g10455 Length=1101
TGGTGTATAGGTTACGTTGTATTGCTAGTTCTTGAATCAAGTGAATTTAGCAACAGTTTC
ATATTTTCTGAACCAAGAAATGAAGGACTAATCACACTTGGAGGATTTTTAAAGTTTTGG
GGAATAGCATTTTTAGTTTTTACGATTCTTATTGCATTTTTCAAACATGAAAATTCCGAA
ACTGATGAAAAATTGGAAGAACATCCTGATTATGGAGTTACTAAAGCATATCCAACATTA
TGGAAAATTCTTAAACTCAAACCCATCATAAGATTTTCATTATTTATGCTAACAGTTAAA
GTTAGTTTTTCAGCTGTTGATAGTGTAACATCTCTTAAACTCATTGAATATGGTGTACCA
AAAGATAAGATAGCATTTTTAGCTATACCCGTTTTACCAATTCAAATAATTCTTCCTTTT
ATCATCAGTCGATTCACTGCAGGAAAATATCCGATGGATTTTTATATTAAGGCATTTAGA
GTTCGTCTTGCTATGTCTATTCTCATGGTAGCTTACGTATTTTTAACATCCAAAATAGTT
AATGGCAAAAAATCCAATGAAATTTCAATTTGGTATTTTATTGGACTTGTTATAGTTTAC
CTAATGTATCATATACCATTTCGAGCAATGACTATCGCAGACATGAGTTTTTTTGCTCGA
GTGAGTGATCCTCTTATCGGAGGAACTTATATGACACTTTTAAATACTATTAATAATTTT
GGAACGAAATGGTCACAAACATTATTCCTTTGGCTTGTTGATATCATTTCATGGAAACAT
TGTATTCAAGACAATCATTTCAACAATTCATTAATAATTTCATTATCAAATAATAAATGT
GCAAATAAGGAAGAAAGAGATCTCTGCATTAAAGCTGGAGGAAAATGTTTAACTGATATT
GATGGTTATTATATCGAATTTATAATCAATTTAATATATGGTATTGGATTTTATGTCATT
GGAAAAAGAATAATTGAATATTTAGAAAAATTACCTATTGATGATTGGCACGTGCTCGCA
AAAGAACATGAAAGAGTTAAAGAAAATGAAAATTCATCACAAAGGGAAGAGAAAATTGCA
TTAAATAAAGATGAGATATAA

>g10455.t2 Gene=g10455 Length=271
MLTVKVSFSAVDSVTSLKLIEYGVPKDKIAFLAIPVLPIQIILPFIISRFTAGKYPMDFY
IKAFRVRLAMSILMVAYVFLTSKIVNGKKSNEISIWYFIGLVIVYLMYHIPFRAMTIADM
SFFARVSDPLIGGTYMTLLNTINNFGTKWSQTLFLWLVDIISWKHCIQDNHFNNSLIISL
SNNKCANKEERDLCIKAGGKCLTDIDGYYIEFIINLIYGIGFYVIGKRIIEYLEKLPIDD
WHVLAKEHERVKENENSSQREEKIALNKDEI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g10455.t2 MobiDBLite mobidb-lite consensus disorder prediction 252 271 -
2 g10455.t2 PANTHER PTHR12778:SF9 ACETYL-COENZYME A TRANSPORTER 1 2 247 1.1E-67
3 g10455.t2 PANTHER PTHR12778 SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED 2 247 1.1E-67
1 g10455.t2 Pfam PF13000 Acetyl-coenzyme A transporter 1 84 243 1.3E-28
15 g10455.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 28 -
17 g10455.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 29 52 -
11 g10455.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 53 63 -
16 g10455.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 64 81 -
13 g10455.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 82 92 -
20 g10455.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 93 110 -
12 g10455.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 111 121 -
18 g10455.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 122 142 -
14 g10455.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 143 207 -
19 g10455.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 208 226 -
10 g10455.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 227 271 -
8 g10455.t2 SUPERFAMILY SSF103473 MFS general substrate transporter 6 165 2.49E-6
5 g10455.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 48 -
7 g10455.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 63 80 -
6 g10455.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 93 112 -
4 g10455.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 207 226 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008521 acetyl-CoA transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values