Gene loci information

Transcript annotation

  • This transcript has been annotated as Acetyl-coenzyme A transporter 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10455 g10455.t3 TTS g10455.t3 9903991 9903991
chr_1 g10455 g10455.t3 isoform g10455.t3 9904610 9905810
chr_1 g10455 g10455.t3 exon g10455.t3.exon1 9904610 9905529
chr_1 g10455 g10455.t3 cds g10455.t3.CDS1 9904610 9905529
chr_1 g10455 g10455.t3 exon g10455.t3.exon2 9905582 9905810
chr_1 g10455 g10455.t3 cds g10455.t3.CDS2 9905582 9905810
chr_1 g10455 g10455.t3 TSS g10455.t3 9905839 9905839

Sequences

>g10455.t3 Gene=g10455 Length=1149
ATGAATAGAAATAGTAGTGAAAATTTTGAAATTGAACAAAATTCGAGTAACGAAGAAGAG
AAGCCAAATTTAAAGGGTGATTTTAAGAATGTTGTACTTCTTGTGGTATTATACATTTTT
CAAAGCATCCCACTTGGACTTGTTACTTCTGTTCCAATTTTAATGCAAAATAGAGGTGCA
ACATATAAAGATCAAGCCATTTTTACAATTGCCTATTATCCATTTTCATTAAAAATTTTA
TGGGCGCCAATTGTCGATTCACTATATTTTAAACGAATTGGTAGAAGAAAAACTTGGCTT
GTTCCCTCTCAATTTATGATTGCTTTATCGATGTTATATTCATCATTTTATGTGAATGAA
TGGCTTGGAAGTGCTGAAAAACCACCAAAAATTTTAATTCTTACTTCAGTATTTTTTCTA
ATGAGAGTCTTTGCTGCAACTCAAGATGTTGCCGTTGATGGATTGGCATTATGTCTTTTG
AAAAAGAGAAATATTGGACATGTTGCAACTTGTGAAATGATTGGAATAAGTTGTGGTTGG
TGTATAGGTTACGTTGTATTGCTAGTTCTTGAATCAAGTGAATTTAGCAACAGTTTCATA
TTTTCTGAACCAAGAAATGAAGGACTAATCACACTTGGAGGATTTTTAAAGTTTTGGGGA
ATAGCATTTTTAGTTTTTACGATTCTTATTGCATTTTTCAAACATGAAAATTCCGAAACT
GATGAAAAATTGGAAGAACATCCTGATTATGGAGTTACTAAAGCATATCCAACATTATGG
AAAATTCTTAAACTCAAACCCATCATAAGATTTTCATTATTTATGCTAACAGTTAAAGTT
AGTTTTTCAGCTGTTGATAGTGTAACATCTCTTAAACTCATTGAATATGGTGTACCAAAA
GATAAGATAGCATTTTTAGCTATACCCGTTTTACCAATTCAAATAATTCTTCCTTTTATC
ATCAGTCGATTCACTGCAGGAAAATATCCGATGGATTTTTATATTAAGGCATTTAGAGTT
CGTCTTGCTATGTCTATTCTCATGGTAGCTTACGTATTTTTAACATCCAAAATAGTTAAT
GGCAAAAAATCCAATGAAATTTCAATTTGGTATTTTATTGGACTTGTTATAGTTTACCTA
ATGTATCAT

>g10455.t3 Gene=g10455 Length=383
MNRNSSENFEIEQNSSNEEEKPNLKGDFKNVVLLVVLYIFQSIPLGLVTSVPILMQNRGA
TYKDQAIFTIAYYPFSLKILWAPIVDSLYFKRIGRRKTWLVPSQFMIALSMLYSSFYVNE
WLGSAEKPPKILILTSVFFLMRVFAATQDVAVDGLALCLLKKRNIGHVATCEMIGISCGW
CIGYVVLLVLESSEFSNSFIFSEPRNEGLITLGGFLKFWGIAFLVFTILIAFFKHENSET
DEKLEEHPDYGVTKAYPTLWKILKLKPIIRFSLFMLTVKVSFSAVDSVTSLKLIEYGVPK
DKIAFLAIPVLPIQIILPFIISRFTAGKYPMDFYIKAFRVRLAMSILMVAYVFLTSKIVN
GKKSNEISIWYFIGLVIVYLMYH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g10455.t3 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 65 382 1.8E-9
15 g10455.t3 MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
3 g10455.t3 PANTHER PTHR12778:SF9 ACETYL-COENZYME A TRANSPORTER 1 17 382 5.7E-117
4 g10455.t3 PANTHER PTHR12778 SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED 17 382 5.7E-117
2 g10455.t3 Pfam PF13000 Acetyl-coenzyme A transporter 1 31 241 4.2E-59
1 g10455.t3 Pfam PF13000 Acetyl-coenzyme A transporter 1 247 335 5.6E-12
18 g10455.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 30 -
29 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 31 54 -
26 g10455.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 55 65 -
33 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 66 90 -
22 g10455.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 91 98 -
36 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 99 119 -
25 g10455.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 120 130 -
34 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 131 160 -
17 g10455.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 161 171 -
30 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 190 -
24 g10455.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 191 209 -
32 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 210 233 -
21 g10455.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 234 270 -
31 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 271 291 -
23 g10455.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 292 302 -
37 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 303 326 -
19 g10455.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 327 337 -
35 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 338 355 -
27 g10455.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 356 366 -
28 g10455.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 367 382 -
20 g10455.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 383 383 -
14 g10455.t3 SUPERFAMILY SSF103473 MFS general substrate transporter 1 379 3.53E-17
9 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 31 53 -
10 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 68 90 -
11 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 99 118 -
6 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 138 160 -
12 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 173 190 -
8 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 210 232 -
7 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 303 322 -
13 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 337 354 -
5 g10455.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 367 382 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008521 acetyl-CoA transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values