Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chitooligosaccharidolytic beta-N-acetylglucosaminidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10488 g10488.t2 TSS g10488.t2 10145731 10145731
chr_1 g10488 g10488.t2 isoform g10488.t2 10145998 10149053
chr_1 g10488 g10488.t2 exon g10488.t2.exon1 10145998 10146068
chr_1 g10488 g10488.t2 cds g10488.t2.CDS1 10145998 10146068
chr_1 g10488 g10488.t2 exon g10488.t2.exon2 10148398 10149053
chr_1 g10488 g10488.t2 cds g10488.t2.CDS2 10148398 10149052
chr_1 g10488 g10488.t2 TTS g10488.t2 NA NA

Sequences

>g10488.t2 Gene=g10488 Length=727
ATGTTTCGTCTACTGCTTTTATATGGCTTCACACTGCTCTCATTTATCGGATTATCTTTA
GCACAACTTGAACCATCATGGGGATATAAATGCGAACATAACAACTGTAAAAAGGTTGAA
TTAACAGCTGATAATAAAAAGACAGCTGTGAGTTTGTCAGTTTGTCGTCTCTATTGCAAT
CTAGATGCAATTGGTACATTATGGCCAAAGCCTACGGGAATTGTACAAATTGGAAATGAT
GTTGTCAAAATCAGCCCAAACGAAATCACATTTAAGACTGAAAGCTTTAAGCGTGAACCA
GCTTATTGGTCTATGGCCACTGAAAGATTCATTGCAATGCAGAAAAAGAAATTACCGTTC
AAATATTCCATTAGATCAGGCGGAAAGTCGCTTATAATTGAAGTGACAGTTGAGAGTGAT
GACATGGTATTCACTTTAGACACCTACGAGGGTTATAAATTGAAAATATCTGAAAATAAC
GATGGTGTTCATGCTGTAATCACAGCTAAGAACTTTTATGGTGCTCGAAATGCTCTCGAA
AGTCTTTCACAACTCATTGTCTATGACAATATTCGAAATGAGATTTTAGCTGTTGCTGCA
GTTGAGATTGAAGATGAACCGAAATTCAAATATCGTGGAATTCTCCTTGACACATCAAGA
AATTATTTTTCTATTGACAGCATTAAGCGTACTATTGAAGGCATGGCAATGGTAAAGCTC
AATACAT

>g10488.t2 Gene=g10488 Length=242
MFRLLLLYGFTLLSFIGLSLAQLEPSWGYKCEHNNCKKVELTADNKKTAVSLSVCRLYCN
LDAIGTLWPKPTGIVQIGNDVVKISPNEITFKTESFKREPAYWSMATERFIAMQKKKLPF
KYSIRSGGKSLIIEVTVESDDMVFTLDTYEGYKLKISENNDGVHAVITAKNFYGARNALE
SLSQLIVYDNIRNEILAVAAVEIEDEPKFKYRGILLDTSRNYFSIDSIKRTIEGMAMVKL
NT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10488.t2 Gene3D G3DSA:3.30.379.10 Chitobiase 24 206 1.3E-49
12 g10488.t2 Gene3D G3DSA:3.20.20.80 Glycosidases 207 242 1.5E-12
3 g10488.t2 PANTHER PTHR22600 BETA-HEXOSAMINIDASE 56 241 2.5E-39
4 g10488.t2 PANTHER PTHR22600:SF3 BETA-HEXOSAMINIDASE FDL-RELATED 56 241 2.5E-39
7 g10488.t2 PRINTS PR00738 Glycosyl hydrolase family 20 signature 165 185 4.1E-15
6 g10488.t2 PRINTS PR00738 Glycosyl hydrolase family 20 signature 203 220 4.1E-15
5 g10488.t2 PRINTS PR00738 Glycosyl hydrolase family 20 signature 232 242 4.1E-15
1 g10488.t2 Pfam PF14845 beta-acetyl hexosaminidase like 67 185 1.9E-11
2 g10488.t2 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 209 242 2.7E-10
14 g10488.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
15 g10488.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
16 g10488.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 16 -
17 g10488.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 21 -
13 g10488.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 242 -
8 g10488.t2 SUPERFAMILY SSF55545 beta-N-acetylhexosaminidase-like domain 67 208 7.03E-22
9 g10488.t2 SUPERFAMILY SSF51445 (Trans)glycosidases 209 242 8.42E-10
10 g10488.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004563 beta-N-acetylhexosaminidase activity MF
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values