General information for g10488.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chitooligosaccharidolytic beta-N-acetylglucosaminidase.
Parent gene
- The parent gene g10488 is located on chr_1: 10149053..10150176 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10488 | g10488.t3 | isoform | g10488.t3 | 10149053 | 10150176 |
| chr_1 | g10488 | g10488.t3 | exon | g10488.t3.exon1 | 10149053 | 10149977 |
| chr_1 | g10488 | g10488.t3 | cds | g10488.t3.CDS1 | 10149146 | 10149977 |
| chr_1 | g10488 | g10488.t3 | exon | g10488.t3.exon2 | 10150040 | 10150176 |
| chr_1 | g10488 | g10488.t3 | cds | g10488.t3.CDS2 | 10150040 | 10150176 |
| chr_1 | g10488 | g10488.t3 | TTS | g10488.t3 | 10150366 | 10150366 |
| chr_1 | g10488 | g10488.t3 | TSS | g10488.t3 | NA | NA |
Sequences
>g10488.t3 Gene=g10488 Length=1062
TTCCATTGGCATATTACCGATTCACATAGCTTCCCACTTGTTGTCAAATCACAACCAGAA
CTGTCAAAACTTGGCGCCTATTCACCTGAGAAAATGTACACCCCTGAAGATGTAGAGGAA
GTTGTACGGTTTGCAAAAGCCCGTGGTATTCGAGTACTGCCTGAGTTTGATGCACCAGCG
CATGTAGGTGAAGGATGGCAACATAAAGATTTGACAACTTGCTTTAATGCGCAACCATGG
AAAGATTATTGTGTCGAAGCACCATGTGGTCAACTAGACCCATCAAAAGATGAGGTTTAC
AATGTATTGGAAGATATTTATCGTGAAATGATTGAACATTTTCAATATCCAGATATATTT
CATATGGGTGGTGATGAAGTTTCTGTCAGTTGTTGGAATTCAAGCTCATCATTGCAGAAT
TGGATGATAGCAAAAGGATGGAATTTGAATGAAAGTGATTTTATGAAATTGTGGGGTTAT
TTTCAGAACAATGCACTTGAAAGATTAGATAAAGCTAACTTTAAAAAAGTTCCGATTATT
TTATGGACAAGTCGATTGACTGAAGAGCCTTTCTTATCACAATATCTTAATAATCAACGT
TACATAATTCAAATTTGGACGAAAGGAGATGACCCTCAAGTACAGACGATTCTTGAGAAA
GGTTTCAAAATGATTGTATCAAATTATGATGCACTCTATCTTGACTGTGGTTTTGGTGCT
TGGGTAACTGAAGGTAATAATTGGTGTTCTCCATACATCGGTTGGCAGAAAATTTACGAT
AATCGAATGGAGACTATTGCCGGTTCTTATGTCAATCAAGTTTATGGTGCTGAGGCTGCT
TTATGGACTGAACAAGTCGATGAGTGGACATTAGATGCTCGTCTTTGGCCTAGAGTATCT
GCAATGGCTGAAAGATTATGGTCAAATCCTGAAGATGGATGGAGAGCAGCAGAATCTCGA
ATGCTTGTTAATCGAAAGCGTTTAGTTGATATTGGTGGACTTTCAGCAGAAAGATTACAG
CCAGAATGGTGTCTTCAAAATGAAGGCGATTGTCCTATTTAA
>g10488.t3 Gene=g10488 Length=322
MYTPEDVEEVVRFAKARGIRVLPEFDAPAHVGEGWQHKDLTTCFNAQPWKDYCVEAPCGQ
LDPSKDEVYNVLEDIYREMIEHFQYPDIFHMGGDEVSVSCWNSSSSLQNWMIAKGWNLNE
SDFMKLWGYFQNNALERLDKANFKKVPIILWTSRLTEEPFLSQYLNNQRYIIQIWTKGDD
PQVQTILEKGFKMIVSNYDALYLDCGFGAWVTEGNNWCSPYIGWQKIYDNRMETIAGSYV
NQVYGAEAALWTEQVDEWTLDARLWPRVSAMAERLWSNPEDGWRAAESRMLVNRKRLVDI
GGLSAERLQPEWCLQNEGDCPI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g10488.t3 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 321 | 0 |
| 2 | g10488.t3 | PANTHER | PTHR22600 | BETA-HEXOSAMINIDASE | 1 | 320 | 0 |
| 3 | g10488.t3 | PANTHER | PTHR22600:SF42 | BETA-HEXOSAMINIDASE | 1 | 320 | 0 |
| 4 | g10488.t3 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 13 | 30 | 0 |
| 7 | g10488.t3 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 61 | 79 | 0 |
| 6 | g10488.t3 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 84 | 97 | 0 |
| 5 | g10488.t3 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 243 | 259 | 0 |
| 8 | g10488.t3 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 260 | 277 | 0 |
| 1 | g10488.t3 | Pfam | PF00728 | Glycosyl hydrolase family 20, catalytic domain | 1 | 278 | 0 |
| 9 | g10488.t3 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 289 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004563 | beta-N-acetylhexosaminidase activity | MF |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
