General information for g10503.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10503 is located on chr_1: 10267173..10269166 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10503 | g10503.t7 | isoform | g10503.t7 | 10267173 | 10269166 |
| chr_1 | g10503 | g10503.t7 | exon | g10503.t7.exon1 | 10267173 | 10267930 |
| chr_1 | g10503 | g10503.t7 | exon | g10503.t7.exon2 | 10267986 | 10268107 |
| chr_1 | g10503 | g10503.t7 | exon | g10503.t7.exon3 | 10268165 | 10268314 |
| chr_1 | g10503 | g10503.t7 | exon | g10503.t7.exon4 | 10268375 | 10269166 |
| chr_1 | g10503 | g10503.t7 | cds | g10503.t7.CDS1 | 10268408 | 10268830 |
| chr_1 | g10503 | g10503.t7 | TSS | g10503.t7 | NA | NA |
| chr_1 | g10503 | g10503.t7 | TTS | g10503.t7 | NA | NA |
Sequences
>g10503.t7 Gene=g10503 Length=1822
AACCTAATTAATATTACAACTTCAAAATTTTAATTTTTGTAGTTATAGTTTTAAAGTGTT
TTAGTAAATTTGAAATTTTATTCCATTGATTCAGTCTAAATAAAATTAATCATTCAAATA
AAAAGTATAATTATAAATATTATTTCGCAGTTATTTCTGGAGTAAAATTTCCACCATCCA
TTGAAGATTTTAGTTGTTGCATCGGTGGTGGTGTATATAATTGTGGCGTTTTTTCTTTAA
CTGGCGATTTTTCAGCACTAGATGAAGAAGACTGTGTTGGTAGTGGCTCTGATGATGAAA
TTTCTCCATTCGCTTCTCTTTCCATTCGTTTTTCTATTTCCTCAGCTTCCTCTTCTAATT
CAAGTTCTCTTTCTTTCATTTTCCTCTCTTCTTCTTCCTGTTGTTCTTTTAATTTTTGTT
GAACGTGTCTTTGAATCTCGCGAGCACTTTTTAAAAGCTTATTCGGTTCAATCACACCCT
TTGATGGAGATGTTTCACGAGACCAAGTTCGTCGTTTCTTTGAACGTTTATGATTGTCAT
CATCTGATGACCAACCTGAATTTGATTTTGAACGAGATCTTCTAGTAGTTGGTGGTGTCT
TGCGAGTATCTCCATCTCTTAAAGTTGTTACTAGTTTTGGCTTTGATGTAGAACGTCTTT
GTTTAGATTTTGAACGTGAGCGTGAGTGTCTTGATTTTGAACGTGATCGAGAATGTGATC
TACTACGCCTTCTTCGAGATGATCGTGATCGACTTGAGCTTCTACTTCTTGAATACGATC
GACGACGACGATAACGGCTTCTACTTCGACTTGATCTTCGACGAGGTGAATAAGAACGTC
TTTCATCATGATCATAATAATCGTCATCATATCGCCGTCTCCGTCATAATCATAATACCG
ACCTCCTCTGCCTCTTCCTCCTCTGCCACCTCTTGATCTCATTCCATATCCACCGCGAAA
GTGCGGATTAAAATATGGTCGAACAGGTGGAAAAATATAAGGCATATAAGGCGCTGGAAT
CCACTCACCTGTTTCAATATTTGGAACCCATCCTGTTGTATACATGCCATTATTCGCTAA
AGGAGGAATCATAGAAGAAGTTGAAGGTTTTTTCTTTCTGTCAGAATCATTTGATGACGA
ACTTGAGCTGCTTTCGGTACTTGATGCAGATGAATCACGATGTTTTTTTGATTTTTTCTT
CCCTTCATCGGAGCTACCACTACTAATGCTCAAGGACTCATCATCTTTATTTGATTTTGA
ATCTTTTTTTGCTTTTTTCTTCTTCAATTTTTTACGCAAACTAAAACCTTTGAAACCTTT
AACATTCCCATTATCATCGTCAGCTGGAAACTTATCTTTGAGTCGATCAAATAAAGCTTC
CAGCAAACGAATACTTTCCATTTTTCTACGAGCCTTGAGCAATTTTCGCTGCTCCTTGTG
TATTTTTCTTGTTAACTCATTACTTTCAGTTTCTGTTATTTTCTGAATATACTTTTGTTT
ACGACGCTCTTCACGTTGCTTTTGCTTTTCAAGCTGAATTTGTCTGCGAACTTCTTCTTT
TGCCTTTTCTTTTTCACGTCTTTCTTGTTCAAGACGTAATTTTTTCTCTTCTTCCTCTGC
CTTTTGTCGATCTTTTTCCATGAGACGTTCGCGAATAACTTTTCGCCTTTTAATACTAGC
TTCACTTAGATGCTTCGACTTATCAAAATCAACAATAATATTAACGGCTACCAATTTATC
AGGATCTTTTCGAACAAGTTTCATCGAACGAAAATCATCCATACATCGTACAAATGAAGC
ATACTCAATAAATTGAACATAA
>g10503.t7 Gene=g10503 Length=140
MPLFAKGGIIEEVEGFFFLSESFDDELELLSVLDADESRCFFDFFFPSSELPLLMLKDSS
SLFDFESFFAFFFFNFLRKLKPLKPLTFPLSSSAGNLSLSRSNKASSKRILSIFLRALSN
FRCSLCIFLVNSLLSVSVIF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10503.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 58 | - |
| 5 | g10503.t7 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 59 | 77 | - |
| 1 | g10503.t7 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 78 | 112 | - |
| 4 | g10503.t7 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 113 | 134 | - |
| 2 | g10503.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 135 | 140 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
