General information for g10514.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10514 is located on chr_1: 10311027..10311614 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10514 | g10514.t2 | TSS | g10514.t2 | 10306433 | 10306433 |
| chr_1 | g10514 | g10514.t2 | isoform | g10514.t2 | 10306541 | 10307584 |
| chr_1 | g10514 | g10514.t2 | exon | g10514.t2.exon1 | 10306541 | 10306629 |
| chr_1 | g10514 | g10514.t2 | cds | g10514.t2.CDS1 | 10306541 | 10306629 |
| chr_1 | g10514 | g10514.t2 | exon | g10514.t2.exon2 | 10306716 | 10306929 |
| chr_1 | g10514 | g10514.t2 | cds | g10514.t2.CDS2 | 10306716 | 10306929 |
| chr_1 | g10514 | g10514.t2 | exon | g10514.t2.exon3 | 10306998 | 10307212 |
| chr_1 | g10514 | g10514.t2 | cds | g10514.t2.CDS3 | 10306998 | 10307212 |
| chr_1 | g10514 | g10514.t2 | exon | g10514.t2.exon4 | 10307269 | 10307584 |
| chr_1 | g10514 | g10514.t2 | cds | g10514.t2.CDS4 | 10307269 | 10307584 |
| chr_1 | g10514 | g10514.t2 | TTS | g10514.t2 | NA | NA |
Sequences
>g10514.t2 Gene=g10514 Length=834
ATGGACACAGAAGTTCCAATTATTGAAGGAGCTGACGAAAAACAAGCTGAAAATGCATTT
TCTGAAGATTTTTCAGCGGATTTTGAAAATGGTTGGAATAATGAAAACACAAATAATCAA
CAGCCAATAAGTCAAGTACAGTCCGAAAATCGTTTCCCGAACAACAACAGTCGAAATCAA
AATAGTAATCGGGCTAAATCAGGCAATCGTGGTGGAGGAAGTAGAGGAGGAGGAAGTCAT
AATAATAATTGGAATCCACATCAACAACAACAGAATCCAGTAACGCAGCAACAACCTCCA
ACACAACAAGAATTATGGGTTGAAACAAAAACAAATGATGGAAAATCATATTTTTATCAT
GCTGTTACACGTGAAACAACTTGGAATCGACCAGAAGGTCCAAATATAAAAATTATGACA
CAACCAGAATATGAAGCTTACACAAGACAACAAATGATTGCCAATAAACCTATAGAACAA
AACATAAATGATCCAAATTTGAAACAGCCAGCGATGGGAATGATTCCTAATTTAATGGAT
CAACCACCACCGTTTTTTAATGCTAATATTTCGCCATTTGGTTTACATGCTCCTCCTCAT
TTTAATGCCCCATGGCAAAATCCTCAATGGCAGCAACATCCAGGGGGTGATCCGGCAAAG
ATGTTTGACAATAAAATTGATCCGAAAATATTGGCTAAAGCGGCTGAATGGAGTGAACAT
CGTGCACCTGATGGTCGTTTATATTATTATAGTGCTACGCGTGGTGAGAGTGTATGGGAA
AAACCTCAAGCTTTAAAAGATCTTGACATTGCGAGGAGTGCTTTCATGCAACAA
>g10514.t2 Gene=g10514 Length=278
MDTEVPIIEGADEKQAENAFSEDFSADFENGWNNENTNNQQPISQVQSENRFPNNNSRNQ
NSNRAKSGNRGGGSRGGGSHNNNWNPHQQQQNPVTQQQPPTQQELWVETKTNDGKSYFYH
AVTRETTWNRPEGPNIKIMTQPEYEAYTRQQMIANKPIEQNINDPNLKQPAMGMIPNLMD
QPPPFFNANISPFGLHAPPHFNAPWQNPQWQQHPGGDPAKMFDNKIDPKILAKAAEWSEH
RAPDGRLYYYSATRGESVWEKPQALKDLDIARSAFMQQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g10514.t2 | CDD | cd00201 | WW | 106 | 133 | 2.10166E-7 |
| 11 | g10514.t2 | CDD | cd00201 | WW | 235 | 262 | 1.10966E-4 |
| 9 | g10514.t2 | Coils | Coil | Coil | 268 | 278 | - |
| 7 | g10514.t2 | Gene3D | G3DSA:2.20.70.10 | - | 85 | 157 | 6.0E-13 |
| 8 | g10514.t2 | Gene3D | G3DSA:2.20.70.10 | - | 223 | 274 | 1.5E-11 |
| 16 | g10514.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - |
| 15 | g10514.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 79 | - |
| 3 | g10514.t2 | PANTHER | PTHR15377:SF3 | TRANSCRIPTION ELONGATION REGULATOR HOMOLOG | 37 | 266 | 3.4E-22 |
| 4 | g10514.t2 | PANTHER | PTHR15377 | TRANSCRIPTION ELONGATION REGULATOR 1 | 37 | 266 | 3.4E-22 |
| 2 | g10514.t2 | Pfam | PF00397 | WW domain | 106 | 131 | 1.8E-7 |
| 1 | g10514.t2 | Pfam | PF00397 | WW domain | 236 | 262 | 1.5E-6 |
| 14 | g10514.t2 | ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 106 | 131 | - |
| 18 | g10514.t2 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 106 | 133 | 11.822 |
| 17 | g10514.t2 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 237 | 264 | 10.64 |
| 13 | g10514.t2 | SMART | SM00456 | ww_5 | 101 | 133 | 7.8E-8 |
| 12 | g10514.t2 | SMART | SM00456 | ww_5 | 232 | 264 | 0.0071 |
| 6 | g10514.t2 | SUPERFAMILY | SSF51045 | WW domain | 92 | 132 | 2.23E-9 |
| 5 | g10514.t2 | SUPERFAMILY | SSF51045 | WW domain | 236 | 266 | 2.97E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed