General information for g10514.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription elongation regulator 1.
Parent gene
- The parent gene g10514 is located on chr_1: 10311027..10311614 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10514 | g10514.t3 | TSS | g10514.t3 | 10306433 | 10306433 |
| chr_1 | g10514 | g10514.t3 | isoform | g10514.t3 | 10306541 | 10308166 |
| chr_1 | g10514 | g10514.t3 | exon | g10514.t3.exon1 | 10306541 | 10306929 |
| chr_1 | g10514 | g10514.t3 | exon | g10514.t3.exon2 | 10306998 | 10307212 |
| chr_1 | g10514 | g10514.t3 | cds | g10514.t3.CDS1 | 10307109 | 10307212 |
| chr_1 | g10514 | g10514.t3 | exon | g10514.t3.exon3 | 10307269 | 10307906 |
| chr_1 | g10514 | g10514.t3 | cds | g10514.t3.CDS2 | 10307269 | 10307906 |
| chr_1 | g10514 | g10514.t3 | exon | g10514.t3.exon4 | 10307969 | 10308166 |
| chr_1 | g10514 | g10514.t3 | cds | g10514.t3.CDS3 | 10307969 | 10308165 |
| chr_1 | g10514 | g10514.t3 | TTS | g10514.t3 | NA | NA |
Sequences
>g10514.t3 Gene=g10514 Length=1440
ATGGACACAGAAGTTCCAATTATTGAAGGAGCTGACGAAAAACAAGCTGAAAATGCATTT
TCTGAAGATTTTTCAGCGGATTTTGAAAAGTAAGAAATTTTTTTATTATTCGGCAAAAAA
GATTTCAATATGTCATCTGTATCTCATCAATAATTTATCGTTGATTGTTTTATAGTGGTT
GGAATAATGAAAACACAAATAATCAACAGCCAATAAGTCAAGTACAGTCCGAAAATCGTT
TCCCGAACAACAACAGTCGAAATCAAAATAGTAATCGGGCTAAATCAGGCAATCGTGGTG
GAGGAAGTAGAGGAGGAGGAAGTCATAATAATAATTGGAATCCACATCAACAACAACAGA
ATCCAGTAACGCAGCAACAACCTCCAACACAACAAGAATTATGGGTTGAAACAAAAACAA
ATGATGGAAAATCATATTTTTATCATGCTGTTACACGTGAAACAACTTGGAATCGACCAG
AAGGTCCAAATATAAAAATTATGACACAACCAGAATATGAAGCTTACACAAGACAACAAA
TGATTGCCAATAAACCTATAGAACAAAACATAAATGATCCAAATTTGAAACAGCCAGCGA
TGGGAATGATTCCTAATTTAATGGATCAACCACCACCGTTTTTTAATGCTAATATTTCGC
CATTTGGTTTACATGCTCCTCCTCATTTTAATGCCCCATGGCAAAATCCTCAATGGCAGC
AACATCCAGGGGGTGATCCGGCAAAGATGTTTGACAATAAAATTGATCCGAAAATATTGG
CTAAAGCGGCTGAATGGAGTGAACATCGTGCACCTGATGGTCGTTTATATTATTATAGTG
CTACGCGTGGTGAGAGTGTATGGGAAAAACCTCAAGCTTTAAAAGATCTTGACATTGCGA
GGAGTGCTTTCATGCAACAACAACAACCAACTTCTCTTGCACCACCACCTATGACAATGA
CACAAGGTAGTATAACATTTGACTCTTCTGGTAATATGGTAAAGCCTGGCGCATTATTGA
ACAAACAAGCTGAAATTGAAGCTGCAGAAAAAGAACGTAAACGAAAAGAAGAACTTGAGA
AATCAAAACAACCAGCTAAACCGCAAGACAAATCTCGACCAATTTCAAGCACTGCGATTG
CAGGTACTCCTTGGTGTGTTGTGTGGACAGGTGATAGCAGATGTTTCTTTTATAATCCTT
CAACTCGTACGAGCGTATGGCAGCGACCAGAAGATCTTATTGGACGTGCGGATGTCGATA
AGCTGGTTTCAACAATACCCGACCAACTTAAAGGAACGGTAAGCGAAAAAGAGGAGCAGG
TTAGTGAAACACCTAGTAATACAGGTAAAAAGAATGAACCAGAGAAGATTGTTGAAGAAG
AAGAAGAATCCGAAGAAGAAGATGAAGAGGTTCCAGCAGCTAAAAAATCTAAAATTGAAG
>g10514.t3 Gene=g10514 Length=313
MTQPEYEAYTRQQMIANKPIEQNINDPNLKQPAMGMIPNLMDQPPPFFNANISPFGLHAP
PHFNAPWQNPQWQQHPGGDPAKMFDNKIDPKILAKAAEWSEHRAPDGRLYYYSATRGESV
WEKPQALKDLDIARSAFMQQQQPTSLAPPPMTMTQGSITFDSSGNMVKPGALLNKQAEIE
AAEKERKRKEELEKSKQPAKPQDKSRPISSTAIAGTPWCVVWTGDSRCFFYNPSTRTSVW
QRPEDLIGRADVDKLVSTIPDQLKGTVSEKEEQVSETPSNTGKKNEPEKIVEEEEESEEE
DEEVPAAKKSKIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10514.t3 | CDD | cd00201 | WW | 97 | 124 | 3.91371E-5 |
| 8 | g10514.t3 | CDD | cd00201 | WW | 216 | 245 | 9.90064E-6 |
| 7 | g10514.t3 | Coils | Coil | Coil | 172 | 195 | - |
| 6 | g10514.t3 | Gene3D | G3DSA:2.20.70.10 | - | 85 | 146 | 8.5E-12 |
| 5 | g10514.t3 | Gene3D | G3DSA:2.20.70.10 | - | 197 | 269 | 4.7E-21 |
| 12 | g10514.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 209 | - |
| 14 | g10514.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 201 | - |
| 13 | g10514.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 313 | - |
| 2 | g10514.t3 | PANTHER | PTHR15377 | TRANSCRIPTION ELONGATION REGULATOR 1 | 6 | 310 | 7.9E-43 |
| 1 | g10514.t3 | Pfam | PF00397 | WW domain | 98 | 124 | 1.7E-6 |
| 16 | g10514.t3 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 99 | 126 | 10.64 |
| 15 | g10514.t3 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 216 | 245 | 10.66 |
| 11 | g10514.t3 | SMART | SM00456 | ww_5 | 94 | 126 | 0.0071 |
| 10 | g10514.t3 | SMART | SM00456 | ww_5 | 213 | 245 | 2.5E-5 |
| 3 | g10514.t3 | SUPERFAMILY | SSF51045 | WW domain | 98 | 128 | 3.41E-9 |
| 4 | g10514.t3 | SUPERFAMILY | SSF51045 | WW domain | 209 | 245 | 1.9E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
