Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10527 g10527.t15 isoform g10527.t15 10355752 10356636
chr_1 g10527 g10527.t15 exon g10527.t15.exon1 10355752 10356169
chr_1 g10527 g10527.t15 exon g10527.t15.exon2 10356225 10356636
chr_1 g10527 g10527.t15 cds g10527.t15.CDS1 10356273 10356605
chr_1 g10527 g10527.t15 TTS g10527.t15 10357268 10357268
chr_1 g10527 g10527.t15 TSS g10527.t15 NA NA

Sequences

>g10527.t15 Gene=g10527 Length=830
GGTAGTAAAAAACAAAAAAAAAAACTTTATTTAGATAACTGATAATTTTTTTATTTAATA
GAATATACAACACGACACTTTGCATGTCCAGTTATCGTTGGAAGTAAATGGGTAGCAAAC
AAATGGTTGTTGCATTAATAATTTAAATGAATGAAATTATTGTAATGTATTTAAATTGCA
GGCTTCATGAGTATGGACAAGAATTTAAACGACCATGTGATTTAATTGAATTTCCAACTG
ATGATCTTTATTACACTCGAATGTATGATCTTAAAAGTTTTGGGATTGATTTTTAGTTTT
GTGCAGCAGATTGATTCATTTCAATTGATTTTCCAATAAATGAAATTTTTAAATTACGTC
TTTCAATTTTCATCAATAATATCAGTGATGATATAGATATCAGAATTGCAACAACTATCC
TGTATCGAATGTCACAAATGTTGTCTCAACCAAATCATTATTGTGTATGTCTGTCCATGT
ATCAAATAATGAAAATCCTGACCTTATTAATTCGATAATGAAATATGCAAAACATATAAG
GAGCAAGGCAATATTTGAATATAATGCTCCAATCATTAAATTCACACCAAAAAATATAAT
ACCAAAGTTAATTATACCGGTTGTCACTAAAGCAAAAGTAGAAAACTGTTGGCAATATTT
AGACAGTATAAAAATTGTATATAATATCTCAAAAATTGAAACTGCACCCAATGCAACACA
ACTTGATATTAAAAAACGTTTAAAAGAACACATTTTTTGCGAAGTGATATCTGCAAGTGG
AAAATTTCTACTAAATTAAAATTTAAAAGACACCTTAGTGTTGACACACG

>g10527.t15 Gene=g10527 Length=110
MSVHVSNNENPDLINSIMKYAKHIRSKAIFEYNAPIIKFTPKNIIPKLIIPVVTKAKVEN
CWQYLDSIKIVYNISKIETAPNATQLDIKKRLKEHIFCEVISASGKFLLN

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed