Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10527 g10527.t5 isoform g10527.t5 10355752 10356598
chr_1 g10527 g10527.t5 exon g10527.t5.exon1 10355752 10356598
chr_1 g10527 g10527.t5 cds g10527.t5.CDS1 10356273 10356596
chr_1 g10527 g10527.t5 TTS g10527.t5 10357268 10357268
chr_1 g10527 g10527.t5 TSS g10527.t5 NA NA

Sequences

>g10527.t5 Gene=g10527 Length=847
GGTAGTAAAAAACAAAAAAAAAAACTTTATTTAGATAACTGATAATTTTTTTATTTAATA
GAATATACAACACGACACTTTGCATGTCCAGTTATCGTTGGAAGTAAATGGGTAGCAAAC
AAATGGTTGTTGCATTAATAATTTAAATGAATGAAATTATTGTAATGTATTTAAATTGCA
GGCTTCATGAGTATGGACAAGAATTTAAACGACCATGTGATTTAATTGAATTTCCAACTG
ATGATCTTTATTACACTCGAATGTATGATCTTAAAAGTTTTGGGATTGATTTTTAGTTTT
GTGCAGCAGATTGATTCATTTCAATTGATTTTCCAATAAATGAAATTTTTAAATTACGTC
TTTCAATTTTCATCAATAATATCAGTGATGATATAGATATCAGAATTGCAACAACTATAA
CTAAAATAAATATCATAAAAATAATACTGAAGTTTTAAATTAAATTTTTTGTACCTGTAT
CGAATGTCACAAATGTTGTCTCAACCAAATCATTATTGTGTATGTCTGTCCATGTATCAA
ATAATGAAAATCCTGACCTTATTAATTCGATAATGAAATATGCAAAACATATAAGGAGCA
AGGCAATATTTGAATATAATGCTCCAATCATTAAATTCACACCAAAAAATATAATACCAA
AGTTAATTATACCGGTTGTCACTAAAGCAAAAGTAGAAAACTGTTGGCAATATTTAGACA
GTATAAAAATTGTATATAATATCTCAAAAATTGAAACTGCACCCAATGCAACACAACTTG
ATATTAAAAAACGTTTAAAAGAACACATTTTTTGCGAAGTGATATCTGCAAGTGGAAAAT
TTCTACT

>g10527.t5 Gene=g10527 Length=108
MSVHVSNNENPDLINSIMKYAKHIRSKAIFEYNAPIIKFTPKNIIPKLIIPVVTKAKVEN
CWQYLDSIKIVYNISKIETAPNATQLDIKKRLKEHIFCEVISASGKFL

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed