General information for g10551.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10551 is located on chr_1: 10446272..10448422 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10551 | g10551.t2 | isoform | g10551.t2 | 10446272 | 10448422 |
| chr_1 | g10551 | g10551.t2 | exon | g10551.t2.exon1 | 10446272 | 10448422 |
| chr_1 | g10551 | g10551.t2 | cds | g10551.t2.CDS1 | 10447146 | 10447634 |
| chr_1 | g10551 | g10551.t2 | TSS | g10551.t2 | NA | NA |
| chr_1 | g10551 | g10551.t2 | TTS | g10551.t2 | NA | NA |
Sequences
>g10551.t2 Gene=g10551 Length=2151
GTGGAAAAAGCTCCAACAATTTTATTTAGACATCAAAATGGTCCAATAGCACAAAGTAAT
GATGGAAGATTGATTGTTTATCCTGGAACAACTGTACACATGGAATGTCTTTGGATGAGA
AGATTTGGTACACCACGATGGAACGTTAGTCATGAATTGAAGTAAGTAATTATTTTTAAA
TTGTTTTATAAATTATAAAAATCTTTTTCTTTTTAAATATAGAAAATATCCTGAAGGTTG
GAATACAGATGAAGGAAGAGATCCACAATTAGAGTATCGTTTGAGTATTTTTAATGCAGA
AGTAGGAGATTCTGGAACTTTTACATGCATCACACCTGCTAGACATACTCATTCAGTTGT
AGTTGAAGTCAAAGCAGTTCATTGTGGTGAAATTATGCCAAGAAGAGGTTTAGTGTTGAG
CACGACTGCTACTCAAATGGGAACAAAAGTTCAATTTTCTTGCAATAACGGTAATGCATT
GATAGGTACACAAGAAATTCAATGTTTAGCCAGTGGAAATTGGAGCGGTCCTTTACCCAT
TTGTGAAAGTATGTAAAAATACTTAAAATACTTTTAAATCGAAAAAATAAAATATTATTG
CATTGATAAAAAAGGTGTCGAATGTGGAGAAGTGCCGATTCCGGCGGGATTAAATGGTTC
TGCACCACGTGTTGCAATCATTTCAAGAGAAGTAGGAGGAAGAGCAGCATTTTCTTGTCC
AGCTGGTCACGGTCTAAAAGGACCGAGTGAAACATTTTGTTTACCAAGCGGTGAATGGAG
TGGACCTGTAAGTAAAATACATTAAAATAAGTTTAAATTAAAGTCTATGTGATATATTAT
TCATTTAACAGATTCCAACTTGTTCAGAAGTTCAATGCTTTCACCCTGGGCAGCCATCAA
ACGGTTTGAATTTTTTGAGTATTTTAAAAAATTAAAAATAAATTGTCTTTTATTTTTTTT
TAAAGGTTATACACAAGGAACACCACCCTATAAAGCAGGTGATGTTGTGCAATTTAATTG
TAATCCAGAATACATGATGCAAGGGCAGCCAATAATTGCGTGTCAAGACAACGGACGATG
GAGCGGTCCTATACCGAAATGTGTTCGAGCATGCAGCTATCCCGGAACAGCAATAAGTGG
ACGTATGTCTTCCGTTAAATTTTACTATACAATTGGTGAAACGGTAGCATTTTCATGTGA
CAATGGTTTAGAAATTAGAGGCCCAAAAATGCTCAAATGTTTAAAAGACGGTAAATGGAG
TTCATCTATTCCTGTTTGCGTTTCATCGGACCATGCAGATACTACAGCTGCCACAGCAGC
TCCAAGAATTACAAGAGCAGCAAAAATTGAACGATTCATTTAAAGCAATTTAAAATACCA
TTATTTATCAGTACGATTTTAGGAGATTATAAATTATAAATGAAAAGATGTGATCGAATG
ATAATATGCTATTAAATACTCAAAACAAAAACAAATCACGTTCATAATCTCAATGTTAAA
TTTTAAGTCAATTATCATTACAAGAAAAAAGAAAATTTAAAATCAGACAGTATTATCTGC
AAAGAAATTATCCATTTCATGTTATTAGAGATATATCTACCCAACTACCTATTTACCTAA
TATTTGTGTTGTATCTCACACTTATTATGTGATGAGATTTTGATAATTTGCTACATTATT
TTTGGGATGTGTTTAATATAAAGTGACTTTAAAATGTGGAAATGGGACATATTCATATTC
AGAAAAAAGCTTCATCAAAATTTTTCTTGTTATAATTGATTGTAACAGATAATCATTAAC
ATATATTAGAGTATAATAAATTGTGATTTACTTGACAAAAAAATTATTTGGACAATTCTC
AAATTGTGTTGTTGTAATTTTTTTAGGAATGGAAATATCCTTTAAATTAGAAAGCATTAT
AAAGTGCTTTAGCACTTAAAAAACATATGACAGGCATTTTGAAGTTGTAAAATATCAATT
TTTGGCTATAAAAATCTTATTTCTTAACCAAATTTTTTCAAACCAAGGTTTTAAAAAATC
AGTATTATTTAAATTAAGAAAACATACGGAGATGTTTTAGTATTACATCATATTGTTGAA
ATTTAAAAAAAGTCCACGGAGCAGATCAGTAATGTTTACTGATCAAGAAAA
>g10551.t2 Gene=g10551 Length=162
MLSPWAAIKRFEFFEYFKKLKINCLLFFFKGYTQGTPPYKAGDVVQFNCNPEYMMQGQPI
IACQDNGRWSGPIPKCVRACSYPGTAISGRMSSVKFYYTIGETVAFSCDNGLEIRGPKML
KCLKDGKWSSSIPVCVSSDHADTTAATAAPRITRAAKIERFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g10551.t2 | CDD | cd00033 | CCP | 32 | 77 | 0.000 |
| 14 | g10551.t2 | CDD | cd00033 | CCP | 80 | 136 | 0.000 |
| 9 | g10551.t2 | Gene3D | G3DSA:2.10.70.10 | Complement Module | 29 | 77 | 0.000 |
| 10 | g10551.t2 | Gene3D | G3DSA:2.10.70.10 | Complement Module | 79 | 135 | 0.000 |
| 3 | g10551.t2 | PANTHER | PTHR19325 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING | 31 | 142 | 0.000 |
| 4 | g10551.t2 | PANTHER | PTHR19325:SF531 | HIG-ANCHORING SCAFFOLD PROTEIN, ISOFORM G | 31 | 142 | 0.000 |
| 1 | g10551.t2 | Pfam | PF00084 | Sushi repeat (SCR repeat) | 32 | 76 | 0.000 |
| 2 | g10551.t2 | Pfam | PF00084 | Sushi repeat (SCR repeat) | 80 | 135 | 0.000 |
| 11 | g10551.t2 | ProSiteProfiles | PS50923 | Sushi/CCP/SCR domain profile. | 22 | 76 | 8.230 |
| 12 | g10551.t2 | ProSiteProfiles | PS50923 | Sushi/CCP/SCR domain profile. | 78 | 137 | 11.348 |
| 8 | g10551.t2 | SMART | SM00032 | CCP_2 | 24 | 76 | 0.000 |
| 7 | g10551.t2 | SMART | SM00032 | CCP_2 | 80 | 135 | 0.000 |
| 5 | g10551.t2 | SUPERFAMILY | SSF57535 | Complement control module/SCR domain | 33 | 84 | 0.000 |
| 6 | g10551.t2 | SUPERFAMILY | SSF57535 | Complement control module/SCR domain | 78 | 136 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
