General information for g10561.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative GPI transamidase component PIG-T.
Parent gene
- The parent gene g10561 is located on chr_1: 10467177..10468797 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10561 | g10561.t3 | TSS | g10561.t3 | 10465390 | 10465390 |
| chr_1 | g10561 | g10561.t3 | isoform | g10561.t3 | 10465664 | 10466756 |
| chr_1 | g10561 | g10561.t3 | exon | g10561.t3.exon1 | 10465664 | 10466756 |
| chr_1 | g10561 | g10561.t3 | cds | g10561.t3.CDS1 | 10466287 | 10466754 |
| chr_1 | g10561 | g10561.t3 | TTS | g10561.t3 | 10467223 | 10467223 |
Sequences
>g10561.t3 Gene=g10561 Length=1093
ACTTTTTATCACGATCAATATCTGAATTATTTCTTCATTATGATATTGTGGAATTACACA
TAACTCTCTCAAATGGTTTATGGAAAACTGAAAGTTGGGGCTTTCCTATTGAATCAGCTG
GCTCAGGAGGAGAATTATATGCTTGGTTTAAAAATCATCTTTCAGAAGATGATATAAAAA
AGCAATGGATTGAATTGTCTGAGGCTTTATCGGGACTTTTGTGTGCATCATTTAGTTTTG
TCGAAGAAACTAATACAATTAATCCAGAATTTTCATTCAGACCAACTTCTTCGTGGAATG
TTCCTCTTAATTCTTCGTTTTTACGATATACAGCATTGCCAAGAGAAGTTGTTTGTACTG
AGAATTTAACACCTTGGAAAAAATTATTGCCATGTGACTCACAAGAGGGATTTGTCTCTC
TTCTCAATGCTCAACACATTTACAGCACAAACTATCACTCTTTAGGGATTCATGTTCGTC
ATATATGTATCGATCAGACTTGTTCAAATGCAATTTTAGAATCCAAACAAACTGTAAATT
TGGTTCATGATCTCAAATTATTTGGTGGAAGTGAATGGTCTATTCGAAAACTTTTCGGAC
AAGGATTAAATGGTGTATGCGCTATGTCAAGTTCGAGTAAAATTTTCTTAGATATTACTG
ATAAAGATTTTGAAATATCACCTCAACCTGAAAATGTAATTTTATCGAAGCGTGGTGGTA
GTGAATCACGTTATGCAGAGTTTGATGTGAGAAAATTAGTTCAAGAAAGCAAAATGATTA
ATATTGCCATTATCAATAAGAAGCATAAAACTATTCCAATTACAAGACCACCACCACTTT
TTGCAAAACGATTTCTTTTAGGCACAGGCAAAGAGAGTGGTAAAATTGTAAATCAAATTA
CTAATTCTCACTACGCAAGCTTAAATATTATAATTTTGGAAAATATTCCTTGGTTTGTGC
CAATTTATTTGCATACATTAAAAGTTAAAACGAGAAACGGAGAAATTAAACCATCATCAA
TCAAATACATTCCAGGAGAACAGCGAAAGAGACCATATTATTTAGAAATTGCTTTAACAA
TTCCATCAAAAAC
>g10561.t3 Gene=g10561 Length=156
MSSSSKIFLDITDKDFEISPQPENVILSKRGGSESRYAEFDVRKLVQESKMINIAIINKK
HKTIPITRPPPLFAKRFLLGTGKESGKIVNQITNSHYASLNIIILENIPWFVPIYLHTLK
VKTRNGEIKPSSIKYIPGEQRKRPYYLEIALTIPSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10561.t3 | PANTHER | PTHR12959 | GPI TRANSAMIDASE COMPONENT PIG-T-RELATED | 2 | 155 | 0 |
| 1 | g10561.t3 | Pfam | PF04113 | Gpi16 subunit, GPI transamidase component | 27 | 155 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042765 | GPI-anchor transamidase complex | CC |
| GO:0016255 | attachment of GPI anchor to protein | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
