Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 27.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10586 g10586.t1 TTS g10586.t1 10543809 10543809
chr_1 g10586 g10586.t1 isoform g10586.t1 10544008 10544678
chr_1 g10586 g10586.t1 exon g10586.t1.exon1 10544008 10544540
chr_1 g10586 g10586.t1 cds g10586.t1.CDS1 10544008 10544540
chr_1 g10586 g10586.t1 exon g10586.t1.exon2 10544624 10544678
chr_1 g10586 g10586.t1 cds g10586.t1.CDS2 10544624 10544678
chr_1 g10586 g10586.t1 TSS g10586.t1 10544821 10544821

Sequences

>g10586.t1 Gene=g10586 Length=588
ATGTCTCATGATTTACGCGCATTATCAATCTTTGAGGATCCATTTTTATCTCATGGTATG
GAACCACGATTTGGTTTAGGATTACTTCCTAATGATTTTTTTTCTGATCGAATCATTCCG
CGTCCAAATATTCATCATCATCATCACTTGCCAACTGGTTATCGTCGCCCGTGGCAAATT
GCTCGTGAAGCTGTCAATGAGTTGAGCAAAGATCAGAAATCTATGCACCTTGGCAAAGAT
GGCTTTCAAGCTTGCGTTGATGTTCATCATTTCAATCCAAATGAAATCACAGTATTGACA
GTTGATCAAACAGTTATTATTGAAGGAAAGCATGAAGAACGTGATGATGCACATGGCACA
ATTGAACGTCACTTTATTCGCAAATATGTCTTGCCAAAGGAGTATGATATGAATACAGTT
CAATCTACTTTATCCAGTGATGGTGTTCTTACAATCAAGGCTCCACCACCAGCTATCGAA
GGATCTAATGAACGTCATATTCCTATCACTCATACAAACGCTCCAGCTCATTTGGGCATT
AAAGAAAACAAACCACAATCTGAAGAGTCTAATGGAAAAGCTCAATAA

>g10586.t1 Gene=g10586 Length=195
MSHDLRALSIFEDPFLSHGMEPRFGLGLLPNDFFSDRIIPRPNIHHHHHLPTGYRRPWQI
AREAVNELSKDQKSMHLGKDGFQACVDVHHFNPNEITVLTVDQTVIIEGKHEERDDAHGT
IERHFIRKYVLPKEYDMNTVQSTLSSDGVLTIKAPPPAIEGSNERHIPITHTNAPAHLGI
KENKPQSEESNGKAQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10586.t1 CDD cd06526 metazoan_ACD 78 155 7.12806E-38
10 g10586.t1 Gene3D G3DSA:2.60.40.790 - 55 191 1.6E-28
12 g10586.t1 MobiDBLite mobidb-lite consensus disorder prediction 173 195 -
2 g10586.t1 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 62 185 1.1E-45
3 g10586.t1 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 62 185 1.1E-45
5 g10586.t1 PRINTS PR00299 Alpha crystallin signature 76 96 2.1E-19
8 g10586.t1 PRINTS PR00299 Alpha crystallin signature 98 111 2.1E-19
6 g10586.t1 PRINTS PR00299 Alpha crystallin signature 113 132 2.1E-19
4 g10586.t1 PRINTS PR00299 Alpha crystallin signature 135 156 2.1E-19
7 g10586.t1 PRINTS PR00299 Alpha crystallin signature 164 179 2.1E-19
1 g10586.t1 Pfam PF00011 Hsp20/alpha crystallin family 78 169 1.9E-23
13 g10586.t1 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 63 172 18.381
9 g10586.t1 SUPERFAMILY SSF49764 HSP20-like chaperones 77 169 1.62E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values