Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 27.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10586 g10586.t2 TTS g10586.t2 10543809 10543809
chr_1 g10586 g10586.t2 isoform g10586.t2 10544008 10544678
chr_1 g10586 g10586.t2 exon g10586.t2.exon1 10544008 10544678
chr_1 g10586 g10586.t2 cds g10586.t2.CDS1 10544008 10544538
chr_1 g10586 g10586.t2 TSS g10586.t2 10544821 10544821

Sequences

>g10586.t2 Gene=g10586 Length=671
ATGTCTCATGATTTACGCGCATTATCAATCTTTGAGGATCCATTTTTATCTCATGGTGAG
AATTTTTTAAATCTTTTGTTATTTAAATTTTTTCTAAAAATGAATTTATACAAATTATTT
AATGCTTTAAATTATTAGGTATGGAACCACGATTTGGTTTAGGATTACTTCCTAATGATT
TTTTTTCTGATCGAATCATTCCGCGTCCAAATATTCATCATCATCATCACTTGCCAACTG
GTTATCGTCGCCCGTGGCAAATTGCTCGTGAAGCTGTCAATGAGTTGAGCAAAGATCAGA
AATCTATGCACCTTGGCAAAGATGGCTTTCAAGCTTGCGTTGATGTTCATCATTTCAATC
CAAATGAAATCACAGTATTGACAGTTGATCAAACAGTTATTATTGAAGGAAAGCATGAAG
AACGTGATGATGCACATGGCACAATTGAACGTCACTTTATTCGCAAATATGTCTTGCCAA
AGGAGTATGATATGAATACAGTTCAATCTACTTTATCCAGTGATGGTGTTCTTACAATCA
AGGCTCCACCACCAGCTATCGAAGGATCTAATGAACGTCATATTCCTATCACTCATACAA
ACGCTCCAGCTCATTTGGGCATTAAAGAAAACAAACCACAATCTGAAGAGTCTAATGGAA
AAGCTCAATAA

>g10586.t2 Gene=g10586 Length=176
MEPRFGLGLLPNDFFSDRIIPRPNIHHHHHLPTGYRRPWQIAREAVNELSKDQKSMHLGK
DGFQACVDVHHFNPNEITVLTVDQTVIIEGKHEERDDAHGTIERHFIRKYVLPKEYDMNT
VQSTLSSDGVLTIKAPPPAIEGSNERHIPITHTNAPAHLGIKENKPQSEESNGKAQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10586.t2 CDD cd06526 metazoan_ACD 59 136 4.05392E-38
10 g10586.t2 Gene3D G3DSA:2.60.40.790 - 36 172 1.2E-28
12 g10586.t2 MobiDBLite mobidb-lite consensus disorder prediction 154 176 -
2 g10586.t2 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 43 166 9.4E-46
3 g10586.t2 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 43 166 9.4E-46
8 g10586.t2 PRINTS PR00299 Alpha crystallin signature 57 77 1.4E-19
6 g10586.t2 PRINTS PR00299 Alpha crystallin signature 79 92 1.4E-19
5 g10586.t2 PRINTS PR00299 Alpha crystallin signature 94 113 1.4E-19
4 g10586.t2 PRINTS PR00299 Alpha crystallin signature 116 137 1.4E-19
7 g10586.t2 PRINTS PR00299 Alpha crystallin signature 145 160 1.4E-19
1 g10586.t2 Pfam PF00011 Hsp20/alpha crystallin family 59 150 1.4E-23
13 g10586.t2 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 44 153 18.381
9 g10586.t2 SUPERFAMILY SSF49764 HSP20-like chaperones 58 150 1.2E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values