Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Heat shock protein 23.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10587 g10587.t6 TSS g10587.t6 10545802 10545802
chr_1 g10587 g10587.t6 isoform g10587.t6 10545894 10546560
chr_1 g10587 g10587.t6 exon g10587.t6.exon1 10545894 10545939
chr_1 g10587 g10587.t6 cds g10587.t6.CDS1 10545894 10545939
chr_1 g10587 g10587.t6 exon g10587.t6.exon2 10546028 10546560
chr_1 g10587 g10587.t6 cds g10587.t6.CDS2 10546028 10546560
chr_1 g10587 g10587.t6 TTS g10587.t6 10546716 10546716

Sequences

>g10587.t6 Gene=g10587 Length=579
ATGTCTATCATTCGTTCATTATTTGATGATCCATTCTTTTCTAATGTTTTTGATTCTGTA
GAAATGGAACCACGATTCGGATTAGGCTTGATTCCTAGTGATTTCTTTTCTGATCGCATT
GTTCCACGCTCTAGTTACTTGCCAACTGGTTATCGTCGCCCGTGGCAAATTGCTCGTGAA
GCTATCAATGAGTTGAGCAAAGATCAGAAATCTATGCACCTTGGCAAAGATGGCTTTCAA
GCTTGCGTCGATGTTCATCATTTCAATCCAAATGAAATCACAGTAAAGACAGTTGATCAA
ACAGTTATTATTGAAGGAAAGCATGAAGAACGTGATGATGCACATGGCACAATTGAACGT
CACTTTATTCGCAAATATGTCTTGCCAAAGGAGTATGATATGAATACAGTTCAATCTACT
TTATCCAGTGATGGTGTTCTTACAATCAAGGCTCCACCACCAGCTATCGAAGGATCTAAT
GAACGTCATATTCCTATCACTCATACAAACGCTCCAGCTCATTTGGGCATTAAAGAGAAC
AAACCACAATCTGAAGAGTCTAATGGAAAGGCTCAATAA

>g10587.t6 Gene=g10587 Length=192
MSIIRSLFDDPFFSNVFDSVEMEPRFGLGLIPSDFFSDRIVPRSSYLPTGYRRPWQIARE
AINELSKDQKSMHLGKDGFQACVDVHHFNPNEITVKTVDQTVIIEGKHEERDDAHGTIER
HFIRKYVLPKEYDMNTVQSTLSSDGVLTIKAPPPAIEGSNERHIPITHTNAPAHLGIKEN
KPQSEESNGKAQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g10587.t6 CDD cd06526 metazoan_ACD 75 152 2.41086E-39
10 g10587.t6 Gene3D G3DSA:2.60.40.790 - 52 188 1.1E-29
12 g10587.t6 MobiDBLite mobidb-lite consensus disorder prediction 170 192 -
2 g10587.t6 PANTHER PTHR45640:SF23 HEAT SHOCK PROTEIN 22-RELATED 59 182 3.9E-47
3 g10587.t6 PANTHER PTHR45640 HEAT SHOCK PROTEIN HSP-12.2-RELATED 59 182 3.9E-47
8 g10587.t6 PRINTS PR00299 Alpha crystallin signature 73 93 1.7E-20
5 g10587.t6 PRINTS PR00299 Alpha crystallin signature 95 108 1.7E-20
4 g10587.t6 PRINTS PR00299 Alpha crystallin signature 110 129 1.7E-20
6 g10587.t6 PRINTS PR00299 Alpha crystallin signature 132 153 1.7E-20
7 g10587.t6 PRINTS PR00299 Alpha crystallin signature 161 176 1.7E-20
1 g10587.t6 Pfam PF00011 Hsp20/alpha crystallin family 75 166 1.8E-24
13 g10587.t6 ProSiteProfiles PS01031 Small heat shock protein (sHSP) domain profile. 60 169 18.994
9 g10587.t6 SUPERFAMILY SSF49764 HSP20-like chaperones 74 166 4.03E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed