General information for g1059.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dynein heavy chain, cytoplasmic.
Parent gene
- The parent gene g1059 is located on chr_3: 7905192..7918349 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1059 | g1059.t6 | TSS | g1059.t6 | 7902016 | 7902016 |
| chr_3 | g1059 | g1059.t6 | isoform | g1059.t6 | 7902120 | 7902933 |
| chr_3 | g1059 | g1059.t6 | exon | g1059.t6.exon1 | 7902120 | 7902366 |
| chr_3 | g1059 | g1059.t6 | cds | g1059.t6.CDS1 | 7902120 | 7902366 |
| chr_3 | g1059 | g1059.t6 | exon | g1059.t6.exon2 | 7902623 | 7902933 |
| chr_3 | g1059 | g1059.t6 | cds | g1059.t6.CDS2 | 7902623 | 7902933 |
| chr_3 | g1059 | g1059.t6 | TTS | g1059.t6 | NA | NA |
Sequences
>g1059.t6 Gene=g1059 Length=558
ATGGGAGATTCTTTGGAAAACATCGATCAACCGATTGAAAGTCAGCAGAATGTATCAATC
GTTGATCAAAAAGCATTTAACAACTATTTGCGAAAATGTGTTAATCTTTTCTTTGATGAC
GAGGAATTTAATTCTACAAAGTTAGAAGAAGCTCTAGATGAGAATAGAGCTAATCAAGAA
TGCATTAAAAAGTTTCTTTCTGATCCTCAAGTGCAAACTCTATACATCCAGAAGTCTTCT
AGTAAGGATGATGAAGGCGATCAAGCTCAAGAGGGTGAAGAAGAAAAAGAATCTTCTCAA
TATTACATCAGCAATGAGGTTCATTTTACTAATCCTCGTTATCAATCACTTGTTTGTGTA
AAGAGAGGAACTGTAATTGAAGCTGACAAGTCTATTCATTCGCAATTGAGACTCATTAAT
TTCTCGGAGGGATCGCCTTATGAAACGCTTCATTCGTACATAAGCAAAACACTTGCACCA
TACTTCAAGAGCTATGTCAAAGAATCAGGTAGAGCAGATCGAGATGGAGATAAAATGGCA
CCTTCTGTCGAAAAGAAA
>g1059.t6 Gene=g1059 Length=186
MGDSLENIDQPIESQQNVSIVDQKAFNNYLRKCVNLFFDDEEFNSTKLEEALDENRANQE
CIKKFLSDPQVQTLYIQKSSSKDDEGDQAQEGEEEKESSQYYISNEVHFTNPRYQSLVCV
KRGTVIEADKSIHSQLRLINFSEGSPYETLHSYISKTLAPYFKSYVKESGRADRDGDKMA
PSVEKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g1059.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 101 | - |
| 1 | g1059.t6 | PANTHER | PTHR10676:SF385 | DYNEIN, CYTOPLASMIC 1, HEAVY CHAIN 1 | 75 | 186 | 6.9E-31 |
| 2 | g1059.t6 | PANTHER | PTHR10676 | DYNEIN HEAVY CHAIN FAMILY PROTEIN | 75 | 186 | 6.9E-31 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007018 | microtubule-based movement | BP |
| GO:0008569 | minus-end-directed microtubule motor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed