General information for g10609.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Non-specific lipid-transfer protein.
Parent gene
- The parent gene g10609 is located on chr_1: 10705226..10706343 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10609 | g10609.t1 | TTS | g10609.t1 | 10704755 | 10704755 |
| chr_1 | g10609 | g10609.t1 | isoform | g10609.t1 | 10704904 | 10706343 |
| chr_1 | g10609 | g10609.t1 | exon | g10609.t1.exon1 | 10704904 | 10705139 |
| chr_1 | g10609 | g10609.t1 | cds | g10609.t1.CDS1 | 10704904 | 10705139 |
| chr_1 | g10609 | g10609.t1 | exon | g10609.t1.exon2 | 10705226 | 10706038 |
| chr_1 | g10609 | g10609.t1 | cds | g10609.t1.CDS2 | 10705226 | 10706038 |
| chr_1 | g10609 | g10609.t1 | exon | g10609.t1.exon3 | 10706108 | 10706237 |
| chr_1 | g10609 | g10609.t1 | cds | g10609.t1.CDS3 | 10706108 | 10706237 |
| chr_1 | g10609 | g10609.t1 | exon | g10609.t1.exon4 | 10706299 | 10706343 |
| chr_1 | g10609 | g10609.t1 | cds | g10609.t1.CDS4 | 10706299 | 10706343 |
| chr_1 | g10609 | g10609.t1 | TSS | g10609.t1 | 10706416 | 10706416 |
Sequences
>g10609.t1 Gene=g10609 Length=1224
ATGTTGAAACGAAGAGTTTTTGTAATTGGTTGTGGAATGACAAAATTTGAAAAGCCAGGT
AGACGAGAGAATTTTGATTATCCCGATATGGCTAAAGAGGCTGTCACAAAGGCACTAAAG
GATGCCAAAATTGATTATAAAGAAATTAAACAGGCCATTGTAGGATTTTGCTACGGCGAG
TCAACAAGTGGTCAAAGAGCACTTTATCAAATGGGAATGACTGGAATTCCAATTTATAAT
GTCAACAACAATTGCTCAACTGGATCAACCGCACTTTATATGGCTAAACAACTCGTTGAA
GGTGGACACAATGATTGTGTGCTTGCACTTGGTTTTGAAAAAATGGAAAGAGGTTCACTC
GGAGTGAAATGGACTGATCGAACTTTTCCACTTGATAAACATCAAGCTATTAATTCAGAA
CTTTATGGCGATTCGAAAGGACCAAGAGCTCCAATACTTTTTGGCAATGCTGGTGAAGAA
CATATGAGAAAGTATGGCTCAAAACCGGAACATTTCGCTAAAATCGCATACAAAAATCAC
AAGCATTCTGTCAACAATCCTTACTCACAATTTAGAGATGAATATACAATGGAACAAATC
ATGTCATCGCCAGTCATTCATCGTGTCCTTACAAAACTTCAATGCTGTCCAACTTCAGAT
GGTTCTGCTTGCTGTATTGTTGCTAATGAGGATTTTGTTCGTCCTCATAAGCTTGAACCT
CAAGCAGTTGAAATTCTCGCTATGGAAATGTGTACTGACTTAGAGTCGACATTCTCAGAA
AAAAGCAGCATTAAATTAGTTGGCTATGATATGGCAAAGAAAGCAGCAGAAAAAGTCTTT
GCTCAAACTAATTATAAGCCTCAAGATGTTGATGTCGTTGAGCTTCACGATTGTTTCTCA
GCCAACGAGCTAATTACCTATGAGGCATTGGGACTTTGTCCCGAGGGCAAAGCACATGAG
CTAATTGATAGAAACGACAACACTTATGGTGGCAAATATGTGATTAATCCAAGTGGTGGT
TTGATTTCGAAAGGACATCCTTTGGGTGCAACTGGTCTGGCACAATGTTCTGAACTATGC
TGGCAATTAAGAGGTGAAGCTGATAAACGTCAAGTGAAAAATTGCAAACTTGCATTACAA
CACAATCTTGGCTTAGGAGGAGCTGTTGTAATTGGGCTTTATAAGCTTGGCTTCCCAGAA
TCAAAAATGCAATCAAAGCTTTAA
>g10609.t1 Gene=g10609 Length=407
MLKRRVFVIGCGMTKFEKPGRRENFDYPDMAKEAVTKALKDAKIDYKEIKQAIVGFCYGE
STSGQRALYQMGMTGIPIYNVNNNCSTGSTALYMAKQLVEGGHNDCVLALGFEKMERGSL
GVKWTDRTFPLDKHQAINSELYGDSKGPRAPILFGNAGEEHMRKYGSKPEHFAKIAYKNH
KHSVNNPYSQFRDEYTMEQIMSSPVIHRVLTKLQCCPTSDGSACCIVANEDFVRPHKLEP
QAVEILAMEMCTDLESTFSEKSSIKLVGYDMAKKAAEKVFAQTNYKPQDVDVVELHDCFS
ANELITYEALGLCPEGKAHELIDRNDNTYGGKYVINPSGGLISKGHPLGATGLAQCSELC
WQLRGEADKRQVKNCKLALQHNLGLGGAVVIGLYKLGFPESKMQSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g10609.t1 | CDD | cd00829 | SCP-x_thiolase | 9 | 394 | 3.18593E-159 |
| 8 | g10609.t1 | Coils | Coil | Coil | 32 | 52 | - |
| 7 | g10609.t1 | Gene3D | G3DSA:3.40.47.10 | - | 5 | 395 | 2.6E-121 |
| 3 | g10609.t1 | PANTHER | PTHR18919:SF83 | CARRIER PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G06380)-RELATED | 3 | 395 | 8.5E-167 |
| 4 | g10609.t1 | PANTHER | PTHR18919 | ACETYL-COA C-ACYLTRANSFERASE | 3 | 395 | 8.5E-167 |
| 9 | g10609.t1 | PIRSF | PIRSF000429 | Ac-CoA_Ac_transf | 1 | 395 | 4.1E-73 |
| 2 | g10609.t1 | Pfam | PF00108 | Thiolase, N-terminal domain | 6 | 229 | 1.0E-19 |
| 1 | g10609.t1 | Pfam | PF02803 | Thiolase, C-terminal domain | 274 | 372 | 8.7E-11 |
| 11 | g10609.t1 | ProSitePatterns | PS00098 | Thiolases acyl-enzyme intermediate signature. | 81 | 99 | - |
| 12 | g10609.t1 | ProSitePatterns | PS00737 | Thiolases signature 2. | 336 | 352 | - |
| 6 | g10609.t1 | SUPERFAMILY | SSF53901 | Thiolase-like | 6 | 238 | 1.65E-47 |
| 5 | g10609.t1 | SUPERFAMILY | SSF53901 | Thiolase-like | 271 | 385 | 2.78E-29 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | MF |
KEGG
Orthology
- This transcript has been annotated with K08764 (sterol carrier protein 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed