General information for g10609.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Non-specific lipid-transfer protein.
Parent gene
- The parent gene g10609 is located on chr_1: 10705226..10706343 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10609 | g10609.t4 | TTS | g10609.t4 | 10704755 | 10704755 |
| chr_1 | g10609 | g10609.t4 | isoform | g10609.t4 | 10704904 | 10706343 |
| chr_1 | g10609 | g10609.t4 | exon | g10609.t4.exon1 | 10704904 | 10705139 |
| chr_1 | g10609 | g10609.t4 | cds | g10609.t4.CDS1 | 10705121 | 10705139 |
| chr_1 | g10609 | g10609.t4 | exon | g10609.t4.exon2 | 10705222 | 10706038 |
| chr_1 | g10609 | g10609.t4 | cds | g10609.t4.CDS2 | 10705222 | 10706038 |
| chr_1 | g10609 | g10609.t4 | exon | g10609.t4.exon3 | 10706108 | 10706343 |
| chr_1 | g10609 | g10609.t4 | cds | g10609.t4.CDS3 | 10706108 | 10706195 |
| chr_1 | g10609 | g10609.t4 | TSS | g10609.t4 | 10706416 | 10706416 |
Sequences
>g10609.t4 Gene=g10609 Length=1289
ATGTTGAAACGAAGAGTTTTTGTAATTGGTTGTGGAATGACAAAAGTAATTAAATATTTA
TTAACTTTAAAATATTTATGACTATTTACTCCTTCTTCTTACATAGTTTGAAAAGCCAGG
TAGACGAGAGAATTTTGATTATCCCGATATGGCTAAAGAGGCTGTCACAAAGGCACTAAA
GGATGCCAAAATTGATTATAAAGAAATTAAACAGGCCATTGTAGGATTTTGCTACGGCGA
GTCAACAAGTGGTCAAAGAGCACTTTATCAAATGGGAATGACTGGAATTCCAATTTATAA
TGTCAACAACAATTGCTCAACTGGATCAACCGCACTTTATATGGCTAAACAACTCGTTGA
AGGTGGACACAATGATTGTGTGCTTGCACTTGGTTTTGAAAAAATGGAAAGAGGTTCACT
CGGAGTGAAATGGACTGATCGAACTTTTCCACTTGATAAACATCAAGCTATTAATTCAGA
ACTTTATGGCGATTCGAAAGGACCAAGAGCTCCAATACTTTTTGGCAATGCTGGTGAAGA
ACATATGAGAAAGTATGGCTCAAAACCGGAACATTTCGCTAAAATCGCATACAAAAATCA
CAAGCATTCTGTCAACAATCCTTACTCACAATTTAGAGATGAATATACAATGGAACAAAT
CATGTCATCGCCAGTCATTCATCGTGTCCTTACAAAACTTCAATGCTGTCCAACTTCAGA
TGGTTCTGCTTGCTGTATTGTTGCTAATGAGGATTTTGTTCGTCCTCATAAGCTTGAACC
TCAAGCAGTTGAAATTCTCGCTATGGAAATGTGTACTGACTTAGAGTCGACATTCTCAGA
AAAAAGCAGCATTAAATTAGTTGGCTATGATATGGCAAAGAAAGCAGCAGAAAAAGTCTT
TGCTCAAACTAATTATAAGCCTCAAGATGTTGATGTCGTTGAGCTTCACGATTGTTTCTC
AGCCAACGAGCTAATTACCTATGAGGCATTGGGACTTTGTCCCGAGGGCAAAGCACATGA
GCTAATTGATAGAAACGACAACACTTATGGTTTGTGGCAAATATGTGATTAATCCAAGTG
GTGGTTTGATTTCGAAAGGACATCCTTTGGGTGCAACTGGTCTGGCACAATGTTCTGAAC
TATGCTGGCAATTAAGAGGTGAAGCTGATAAACGTCAAGTGAAAAATTGCAAACTTGCAT
TACAACACAATCTTGGCTTAGGAGGAGCTGTTGTAATTGGGCTTTATAAGCTTGGCTTCC
CAGAATCAAAAATGCAATCAAAGCTTTAA
>g10609.t4 Gene=g10609 Length=307
MAKEAVTKALKDAKIDYKEIKQAIVGFCYGESTSGQRALYQMGMTGIPIYNVNNNCSTGS
TALYMAKQLVEGGHNDCVLALGFEKMERGSLGVKWTDRTFPLDKHQAINSELYGDSKGPR
APILFGNAGEEHMRKYGSKPEHFAKIAYKNHKHSVNNPYSQFRDEYTMEQIMSSPVIHRV
LTKLQCCPTSDGSACCIVANEDFVRPHKLEPQAVEILAMEMCTDLESTFSEKSSIKLVGY
DMAKKAAEKVFAQTNYKPQDVDVVELHDCFSANELITYEALGLCPEGKAHELIDRNDNTY
GLWQICD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10609.t4 | CDD | cd00829 | SCP-x_thiolase | 1 | 301 | 2.92061E-112 |
| 8 | g10609.t4 | Coils | Coil | Coil | 3 | 23 | - |
| 7 | g10609.t4 | Gene3D | G3DSA:3.40.47.10 | - | 1 | 302 | 4.1E-83 |
| 2 | g10609.t4 | PANTHER | PTHR18919:SF83 | CARRIER PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G06380)-RELATED | 1 | 293 | 2.1E-119 |
| 3 | g10609.t4 | PANTHER | PTHR18919 | ACETYL-COA C-ACYLTRANSFERASE | 1 | 293 | 2.1E-119 |
| 1 | g10609.t4 | Pfam | PF00108 | Thiolase, N-terminal domain | 2 | 201 | 8.4E-16 |
| 6 | g10609.t4 | ProSitePatterns | PS00098 | Thiolases acyl-enzyme intermediate signature. | 52 | 70 | - |
| 5 | g10609.t4 | SUPERFAMILY | SSF53901 | Thiolase-like | 1 | 209 | 2.31E-43 |
| 4 | g10609.t4 | SUPERFAMILY | SSF53901 | Thiolase-like | 242 | 288 | 4.42E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed