Gene loci information

Transcript annotation

  • This transcript has been annotated as Non-specific lipid-transfer protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10610 g10610.t9 TTS g10610.t9 10708676 10708676
chr_1 g10610 g10610.t9 isoform g10610.t9 10709523 10711241
chr_1 g10610 g10610.t9 exon g10610.t9.exon1 10709523 10710332
chr_1 g10610 g10610.t9 cds g10610.t9.CDS1 10709523 10710332
chr_1 g10610 g10610.t9 exon g10610.t9.exon2 10710729 10710858
chr_1 g10610 g10610.t9 cds g10610.t9.CDS2 10710729 10710782
chr_1 g10610 g10610.t9 exon g10610.t9.exon3 10711197 10711241
chr_1 g10610 g10610.t9 TSS g10610.t9 10711331 10711331

Sequences

>g10610.t9 Gene=g10610 Length=985
ATGGGAAAACAACGAGTTTTTGTTATTGGATGTGGTATGACAAAGTTCGAAAAGCCTGGT
AGACGACAGGATTTCGATTATCCTGATATGGCCAAAGAAGCTGTCACAAAAGCACTGAAA
GATGCCAAAATTGACTATAGAGAAATTAAACAAGCTGTTTGTGGATTTTGTTATGTCATG
CAGTGGTCAAAGAGCACTCTATCAAATGGGAATGACTGGAATTCCAATCTATAATGTCAA
CAATAATTGTTCAACTGGTGCATCTGCATTGATTCTTGCTAAGCAACTTATTGAAACAGG
TCAAAATGATTGTGTACTTGCACTTGGTTTTGAAAAAATGGAACGAGGATCGCTTGGAAC
AAAATGGACTGATCGAACAATTCCACTTGATAAACATTTTGAAGTCATGATGGAAATTGA
TGGTATGACTGCTGCACCACCTGCAGCTCAACTCTTTGGCAATGCTGGTGAAGAACATAT
GAGAAAGTATGGCTCAAAACCGGAACATTTCGCTAAAATCGCGTACAAAAATCACAAGCA
TTCTGTCAACAATCCTTACTCACAATTTAGAGATGAATATACTTTGGAGCAAGTGAAATC
TTCACCTAACGTTCATCGTGTCCTTACAAAACTTCAATGTTGTCCAACTTCAGATGGTTC
AGCTTGCTGTATTGTTGCTAATGAGGATTTTGTTCGTCGTCATAAGCTCGAAGCTCAGGC
AGTTGAAATTCTCGCTATGGAAATGTGTACTGACTTAGAGTCGACATTCTCAGAAAAAAG
TGCAATTAAATTAGTTGGCTATGATATGGCAAAGAAAGCAGCAGAAAAAGTCTTTACTCA
AACTAATTATAAGCCTCAAGATGTTGATGTTGTTGAGCTTCACGATTGTTTCTCAGCCAA
CGAGCTAATTACCTATGAGGCATTGGGACTTTGTCCCGAGGGCAAAGCACATGAGCTAAT
TGATAGAAACGACAACACTTATGGT

>g10610.t9 Gene=g10610 Length=288
MPKLTIEKLNKLFVDFVMSCSGQRALYQMGMTGIPIYNVNNNCSTGASALILAKQLIETG
QNDCVLALGFEKMERGSLGTKWTDRTIPLDKHFEVMMEIDGMTAAPPAAQLFGNAGEEHM
RKYGSKPEHFAKIAYKNHKHSVNNPYSQFRDEYTLEQVKSSPNVHRVLTKLQCCPTSDGS
ACCIVANEDFVRRHKLEAQAVEILAMEMCTDLESTFSEKSAIKLVGYDMAKKAAEKVFTQ
TNYKPQDVDVVELHDCFSANELITYEALGLCPEGKAHELIDRNDNTYG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g10610.t9 Gene3D G3DSA:3.40.47.10 - 4 288 0
2 g10610.t9 PANTHER PTHR18919:SF83 CARRIER PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G06380)-RELATED 19 279 0
3 g10610.t9 PANTHER PTHR18919 ACETYL-COA C-ACYLTRANSFERASE 19 279 0
1 g10610.t9 Pfam PF00108 Thiolase, N-terminal domain 25 153 0
4 g10610.t9 SUPERFAMILY SSF53901 Thiolase-like 20 196 0
5 g10610.t9 SUPERFAMILY SSF53901 Thiolase-like 172 276 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed