Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ATP synthase subunit delta, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10613 g10613.t5 isoform g10613.t5 10754992 10755955
chr_1 g10613 g10613.t5 exon g10613.t5.exon1 10754992 10755269
chr_1 g10613 g10613.t5 TTS g10613.t5 10754993 10754993
chr_1 g10613 g10613.t5 cds g10613.t5.CDS1 10755207 10755269
chr_1 g10613 g10613.t5 exon g10613.t5.exon2 10755330 10755539
chr_1 g10613 g10613.t5 cds g10613.t5.CDS2 10755330 10755539
chr_1 g10613 g10613.t5 exon g10613.t5.exon3 10755612 10755755
chr_1 g10613 g10613.t5 cds g10613.t5.CDS3 10755612 10755743
chr_1 g10613 g10613.t5 exon g10613.t5.exon4 10755941 10755955
chr_1 g10613 g10613.t5 TSS g10613.t5 10755999 10755999

Sequences

>g10613.t5 Gene=g10613 Length=647
TCTCAATTTTCACAGCGATTATTCGACATGTCCTTTGCAGTAAGAAGCGCCCGTCTTCTC
TCATCGCGTGGTCTTCGCGTTATTCAATCGCGTGGATATGCAGATGAAATGAGCTTCACA
TTGGCAGCCGCTAATAGAGTTTTTTACGATAATGCAAATGTTCTTAAACCAGGCATTGTG
ACAGTATATGAAGCCGATGGTTCACAAAAGAAAGTATTCGTTTCAAGTGGAACAATAACA
GTGAATGAAGACTCATCAGTTCAAGTACTTGCCGAAGAGGCACAACCAATTGAAAATCTT
GATGCTAGCGCCGCTCGTGAAGTTCTCGCTAAATCACAGTCTGAATTGGCATCTGCTTCA
ACTGACAAAGCAAGAGCTGAAGCTGCAATCGCTGTTGAAGTCGCCGAAGCAATTGTAAAA
GCTGCTGAATAAGCATGAAATTGTTAAATTTAGGTTCCAATAAAATAATTACGATATCCC
TACACTGCACCATCAACACAATAACAAAATACATCTTTTTTCTCTGATTGACGGATATGT
CATTAAAAATTAATAATAAAACGAAGAGCGCTTCAATGAAGAGCGAATTGTAATCTTACG
GGATTTAGTGAAGTCAAAAATAAAAAAAATTCCTTTTGTGAAAATTA

>g10613.t5 Gene=g10613 Length=134
MSFAVRSARLLSSRGLRVIQSRGYADEMSFTLAAANRVFYDNANVLKPGIVTVYEADGSQ
KKVFVSSGTITVNEDSSVQVLAEEAQPIENLDASAAREVLAKSQSELASASTDKARAEAA
IAVEVAEAIVKAAE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g10613.t5 CDD cd12152 F1-ATPase_delta 45 116 7.70632E-16
8 g10613.t5 Coils Coil Coil 100 120 -
7 g10613.t5 Gene3D G3DSA:2.60.15.10 ATP Synthase; domain 1 43 91 6.8E-16
6 g10613.t5 Gene3D G3DSA:1.20.5.440 - 92 134 7.2E-7
2 g10613.t5 PANTHER PTHR13822:SF7 ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL 44 134 3.0E-25
3 g10613.t5 PANTHER PTHR13822 ATP SYNTHASE DELTA/EPSILON CHAIN 44 134 3.0E-25
1 g10613.t5 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 45 85 1.4E-5
5 g10613.t5 SUPERFAMILY SSF51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain 28 86 3.01E-8
4 g10613.t5 SUPERFAMILY SSF46604 Epsilon subunit of F1F0-ATP synthase C-terminal domain 90 132 3.4E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) CC
GO:0015986 ATP synthesis coupled proton transport BP
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed