Gene loci information

Transcript annotation

  • This transcript has been annotated as AP2-associated protein kinase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10615 g10615.t1 TSS g10615.t1 10757304 10757304
chr_1 g10615 g10615.t1 isoform g10615.t1 10758125 10760697
chr_1 g10615 g10615.t1 exon g10615.t1.exon1 10758125 10758257
chr_1 g10615 g10615.t1 cds g10615.t1.CDS1 10758125 10758257
chr_1 g10615 g10615.t1 exon g10615.t1.exon2 10758367 10758485
chr_1 g10615 g10615.t1 cds g10615.t1.CDS2 10758367 10758485
chr_1 g10615 g10615.t1 exon g10615.t1.exon3 10758658 10758791
chr_1 g10615 g10615.t1 cds g10615.t1.CDS3 10758658 10758791
chr_1 g10615 g10615.t1 exon g10615.t1.exon4 10758857 10759100
chr_1 g10615 g10615.t1 cds g10615.t1.CDS4 10758857 10759100
chr_1 g10615 g10615.t1 exon g10615.t1.exon5 10759181 10759492
chr_1 g10615 g10615.t1 cds g10615.t1.CDS5 10759181 10759492
chr_1 g10615 g10615.t1 exon g10615.t1.exon6 10759557 10760239
chr_1 g10615 g10615.t1 cds g10615.t1.CDS6 10759557 10760239
chr_1 g10615 g10615.t1 exon g10615.t1.exon7 10760302 10760489
chr_1 g10615 g10615.t1 cds g10615.t1.CDS7 10760302 10760489
chr_1 g10615 g10615.t1 exon g10615.t1.exon8 10760549 10760697
chr_1 g10615 g10615.t1 cds g10615.t1.CDS8 10760549 10760697
chr_1 g10615 g10615.t1 TTS g10615.t1 10761040 10761040

Sequences

>g10615.t1 Gene=g10615 Length=1962
ATGAAAAAAATATTTTCAAAACTTGAAAATAAAAATGAGGAAAAATCGACATCAAATTAT
GTGACAAATTATACGGGAAAGGTTTTTCAAATCAATAAGCATTCAGTAGTTGTTGAGGAA
GTGTTAGCTGAAGGCGGTTTCGCAATAGTGTTTCTTGTAAAAGGCAATAATGGAGTCAAA
TATGCACTTAAAAGGATGTATGTGAATAACGAGGCAGATCTCACAGTTGCAAAACGTGAA
ATTCAAATAACTAGCAACTTGTGTGGTCATAAGAATTTGATTGGATATATCGATAGTAGT
ATAACACTTGTTGGAAATGGAGTTCATGAGATTTTGGTGCTCATGCCGTACTATAAAGTT
CATCTTTTAAATTTAATGAATTCAAAACTTAACATTGGCTTCACCGAACAAGAAGTGTTG
AAAATCTTCTGTGATATACTTGAAGGATTATCGCGTTTACATTTTTGTCAAACACCAATT
ATTCATCGCGATCTAAAAGTTGAAAATGTACTACAAGATGATAATGGCAATTTTATCCTA
TGTGATTTTGGAAGTGCTACTGGTAAAATTTTAAATCCAAAGATTCACGGTGTTTCAGTA
GTTGAAGAAGAAATTAAAAAATATACCACGTTATCGTATCGTGCACCAGAAATGATTGAT
TTATATACACTAGCTCAGCCAATCACAACAAAGAGTGATATATGGGCAATGGGATGCTTA
CTCTATAAACTTTGTTTCTTTTCACTTCCCTTTGGCGAGAGCACGCTCGCTATACAAAAT
GGAACCTTCACTATTCCTGATAATTCTAGATATTCAACAGCTATGCATCAATTAATTCGT
TACATGCTTGAACCAGATGCTGAGAAACGACCAAACGTGTTTCAAGTTGGAGAAATTGCT
TTCCGCATGCAAAACCGCAAAAGTCCAATTCTAAATCTTTACAAACAACCAGTTCCAAGT
TTAGAACAATTAATTATTCCACCATTTGAAAGTGATGTTAAAAAATCTTCAATTTTGAGT
ACACCTAAAGCAAGTACGAAACCATCATCGTCCGTAAATTCTTCATCAGTAATATCGGCA
GCATCAGTACCATCATCAAGTGTAACAAGTGTAACACCTCGTCAAAGACCGAAAGCATGT
CAATTAAATCCAGTTAGCAATAATCAATTTACAATTGGTTTACCACCAAGTCCATCACCG
CGAAATGTCCTCTCTTCACCCATTGATGCACAAAATTTTAGAGCACCTCAATCAATCAAT
CATCAGAACCAAACACCAGATAATAATTTCAATGCCCAATTCGAAGTTGATTTTACCAAT
ATTAATATTAATCAAACACAATCGCAACAACAGCAGCAGCAGCAACCAACTCAAATACAA
CAGCAGCACCAGCATGTTAGTGATGAAACTGCAAAATTTAGCAATTTATTTAAATCTACA
TTTCCCGATCCATTTGAACACGATGACACAGAAGTAGTGCAAATACAAAAAAATTACGTT
GAACCGCAAATTGTAAATGAACAACAAACATTTGAGAATATGATAGAAAATCAGCAACAA
CAACAATCGACGGTAAAAGTGAATCAGCATCGTCGTTATATGAGTGATACATCAGGATTT
AAAATAAATCAACCAGACCTTAGTGGACATTCCTTATCAAGTGGTGATTTAATATCAACT
AACTATAAAAAAGACACAACTGAAGCCATCTCAAGATGGAATCCGTTTGAAGATTCAAAT
TTTTGTCAATCAGTATCTGTTACTGAAGAGGAAGATTTATTTGGGGCTGAATTTGACAAA
ATTAGACAAGAAGGAACAAAATCGTTGGAAAAAATTCCAGCACCTGAAGAAACGGTTGCA
TCGATACCAGAAGATCCTTTTCAAGCACCATTTAGCTTAAGACAGCAGAGAGCTCTCAAA
AAGAATGGAAGTGTGGAATTAGAGAATAAAATTTGTATTTAG

>g10615.t1 Gene=g10615 Length=653
MKKIFSKLENKNEEKSTSNYVTNYTGKVFQINKHSVVVEEVLAEGGFAIVFLVKGNNGVK
YALKRMYVNNEADLTVAKREIQITSNLCGHKNLIGYIDSSITLVGNGVHEILVLMPYYKV
HLLNLMNSKLNIGFTEQEVLKIFCDILEGLSRLHFCQTPIIHRDLKVENVLQDDNGNFIL
CDFGSATGKILNPKIHGVSVVEEEIKKYTTLSYRAPEMIDLYTLAQPITTKSDIWAMGCL
LYKLCFFSLPFGESTLAIQNGTFTIPDNSRYSTAMHQLIRYMLEPDAEKRPNVFQVGEIA
FRMQNRKSPILNLYKQPVPSLEQLIIPPFESDVKKSSILSTPKASTKPSSSVNSSSVISA
ASVPSSSVTSVTPRQRPKACQLNPVSNNQFTIGLPPSPSPRNVLSSPIDAQNFRAPQSIN
HQNQTPDNNFNAQFEVDFTNININQTQSQQQQQQQPTQIQQQHQHVSDETAKFSNLFKST
FPDPFEHDDTEVVQIQKNYVEPQIVNEQQTFENMIENQQQQQSTVKVNQHRRYMSDTSGF
KINQPDLSGHSLSSGDLISTNYKKDTTEAISRWNPFEDSNFCQSVSVTEEEDLFGAEFDK
IRQEGTKSLEKIPAPEETVASIPEDPFQAPFSLRQQRALKKNGSVELENKICI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g10615.t1 CDD cd14037 STKc_NAK_like 34 305 2.06871E-161
4 g10615.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 25 326 1.3E-95
8 g10615.t1 MobiDBLite mobidb-lite consensus disorder prediction 340 386 -
7 g10615.t1 MobiDBLite mobidb-lite consensus disorder prediction 446 469 -
2 g10615.t1 PANTHER PTHR22967 SERINE/THREONINE PROTEIN KINASE 1 525 2.0E-162
1 g10615.t1 Pfam PF00069 Protein kinase domain 38 296 2.2E-38
9 g10615.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 36 311 32.923
6 g10615.t1 SMART SM00220 serkin_6 36 301 1.5E-35
3 g10615.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 22 350 8.77E-56

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values