General information for g10615.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as BMP-2-inducible protein kinase.
Parent gene
- The parent gene g10615 is located on chr_1: 10760495..10761410 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10615 | g10615.t4 | TSS | g10615.t4 | 10757723 | 10757723 |
| chr_1 | g10615 | g10615.t4 | isoform | g10615.t4 | 10758658 | 10760487 |
| chr_1 | g10615 | g10615.t4 | exon | g10615.t4.exon1 | 10758658 | 10758791 |
| chr_1 | g10615 | g10615.t4 | cds | g10615.t4.CDS1 | 10758748 | 10758791 |
| chr_1 | g10615 | g10615.t4 | exon | g10615.t4.exon2 | 10758857 | 10759100 |
| chr_1 | g10615 | g10615.t4 | cds | g10615.t4.CDS2 | 10758857 | 10759100 |
| chr_1 | g10615 | g10615.t4 | exon | g10615.t4.exon3 | 10759181 | 10759492 |
| chr_1 | g10615 | g10615.t4 | cds | g10615.t4.CDS3 | 10759181 | 10759492 |
| chr_1 | g10615 | g10615.t4 | exon | g10615.t4.exon4 | 10759557 | 10760239 |
| chr_1 | g10615 | g10615.t4 | cds | g10615.t4.CDS4 | 10759557 | 10760239 |
| chr_1 | g10615 | g10615.t4 | exon | g10615.t4.exon5 | 10760302 | 10760487 |
| chr_1 | g10615 | g10615.t4 | cds | g10615.t4.CDS5 | 10760302 | 10760485 |
| chr_1 | g10615 | g10615.t4 | TTS | g10615.t4 | 10761040 | 10761040 |
Sequences
>g10615.t4 Gene=g10615 Length=1559
AGCAACTTGTGTGGTCATAAGAATTTGATTGGATATATCGATAGTAGTATAACACTTGTT
GGAAATGGAGTTCATGAGATTTTGGTGCTCATGCCGTACTATAAAGTTCATCTTTTAAAT
TTAATGAATTCAAAACTTAACATTGGCTTCACCGAACAAGAAGTGTTGAAAATCTTCTGT
GATATACTTGAAGGATTATCGCGTTTACATTTTTGTCAAACACCAATTATTCATCGCGAT
CTAAAAGTTGAAAATGTACTACAAGATGATAATGGCAATTTTATCCTATGTGATTTTGGA
AGTGCTACTGGTAAAATTTTAAATCCAAAGATTCACGGTGTTTCAGTAGTTGAAGAAGAA
ATTAAAAAATATACCACGTTATCGTATCGTGCACCAGAAATGATTGATTTATATACACTA
GCTCAGCCAATCACAACAAAGAGTGATATATGGGCAATGGGATGCTTACTCTATAAACTT
TGTTTCTTTTCACTTCCCTTTGGCGAGAGCACGCTCGCTATACAAAATGGAACCTTCACT
ATTCCTGATAATTCTAGATATTCAACAGCTATGCATCAATTAATTCGTTACATGCTTGAA
CCAGATGCTGAGAAACGACCAAACGTGTTTCAAGTTGGAGAAATTGCTTTCCGCATGCAA
AACCGCAAAAGTCCAATTCTAAATCTTTACAAACAACCAGTTCCAAGTTTAGAACAATTA
ATTATTCCACCATTTGAAAGTGATGTTAAAAAATCTTCAATTTTGAGTACACCTAAAGCA
AGTACGAAACCATCATCGTCCGTAAATTCTTCATCAGTAATATCGGCAGCATCAGTACCA
TCATCAAGTGTAACAAGTGTAACACCTCGTCAAAGACCGAAAGCATGTCAATTAAATCCA
GTTAGCAATAATCAATTTACAATTGGTTTACCACCAAGTCCATCACCGCGAAATGTCCTC
TCTTCACCCATTGATGCACAAAATTTTAGAGCACCTCAATCAATCAATCATCAGAACCAA
ACACCAGATAATAATTTCAATGCCCAATTCGAAGTTGATTTTACCAATATTAATATTAAT
CAAACACAATCGCAACAACAGCAGCAGCAGCAACCAACTCAAATACAACAGCAGCACCAG
CATGTTAGTGATGAAACTGCAAAATTTAGCAATTTATTTAAATCTACATTTCCCGATCCA
TTTGAACACGATGACACAGAAGTAGTGCAAATACAAAAAAATTACGTTGAACCGCAAATT
GTAAATGAACAACAAACATTTGAGAATATGATAGAAAATCAGCAACAACAACAATCGACG
GTAAAAGTGAATCAGCATCGTCGTTATATGAGTGATACATCAGGATTTAAAATAAATCAA
CCAGACCTTAGTGGACATTCCTTATCAAGTGGTGATTTAATATCAACTAACTATAAAAAA
GACACAACTGAAGCCATCTCAAGATGGAATCCGTTTGAAGATTCAAATTTTTGTCAATCA
GTATCTGTTACTGAAGAGGAAGATTTATTTGGGGCTGAATTTGACAAAATTAGACAAGA
>g10615.t4 Gene=g10615 Length=489
MPYYKVHLLNLMNSKLNIGFTEQEVLKIFCDILEGLSRLHFCQTPIIHRDLKVENVLQDD
NGNFILCDFGSATGKILNPKIHGVSVVEEEIKKYTTLSYRAPEMIDLYTLAQPITTKSDI
WAMGCLLYKLCFFSLPFGESTLAIQNGTFTIPDNSRYSTAMHQLIRYMLEPDAEKRPNVF
QVGEIAFRMQNRKSPILNLYKQPVPSLEQLIIPPFESDVKKSSILSTPKASTKPSSSVNS
SSVISAASVPSSSVTSVTPRQRPKACQLNPVSNNQFTIGLPPSPSPRNVLSSPIDAQNFR
APQSINHQNQTPDNNFNAQFEVDFTNININQTQSQQQQQQQPTQIQQQHQHVSDETAKFS
NLFKSTFPDPFEHDDTEVVQIQKNYVEPQIVNEQQTFENMIENQQQQQSTVKVNQHRRYM
SDTSGFKINQPDLSGHSLSSGDLISTNYKKDTTEAISRWNPFEDSNFCQSVSVTEEEDLF
GAEFDKIRQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g10615.t4 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 214 | 3.2E-69 |
| 6 | g10615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 272 | - |
| 7 | g10615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 355 | - |
| 2 | g10615.t4 | PANTHER | PTHR22967:SF57 | NUMB-ASSOCIATED KINASE, ISOFORM A | 1 | 408 | 5.2E-114 |
| 3 | g10615.t4 | PANTHER | PTHR22967 | SERINE/THREONINE PROTEIN KINASE | 1 | 408 | 5.2E-114 |
| 1 | g10615.t4 | Pfam | PF00069 | Protein kinase domain | 16 | 182 | 1.1E-28 |
| 9 | g10615.t4 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 197 | 25.884 |
| 5 | g10615.t4 | SMART | SM00220 | serkin_6 | 4 | 187 | 1.5E-8 |
| 4 | g10615.t4 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 237 | 3.78E-40 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
