Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative BMP-2-inducible protein kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10615 g10615.t5 TSS g10615.t5 10758104 10758104
chr_1 g10615 g10615.t5 isoform g10615.t5 10759093 10760237
chr_1 g10615 g10615.t5 exon g10615.t5.exon1 10759093 10759100
chr_1 g10615 g10615.t5 exon g10615.t5.exon2 10759181 10759492
chr_1 g10615 g10615.t5 cds g10615.t5.CDS1 10759202 10759492
chr_1 g10615 g10615.t5 exon g10615.t5.exon3 10759557 10760237
chr_1 g10615 g10615.t5 cds g10615.t5.CDS2 10759557 10760237
chr_1 g10615 g10615.t5 TTS g10615.t5 10761040 10761040

Sequences

>g10615.t5 Gene=g10615 Length=1001
ATACCACGTTATCGTATCGTGCACCAGAAATGATTGATTTATATACACTAGCTCAGCCAA
TCACAACAAAGAGTGATATATGGGCAATGGGATGCTTACTCTATAAACTTTGTTTCTTTT
CACTTCCCTTTGGCGAGAGCACGCTCGCTATACAAAATGGAACCTTCACTATTCCTGATA
ATTCTAGATATTCAACAGCTATGCATCAATTAATTCGTTACATGCTTGAACCAGATGCTG
AGAAACGACCAAACGTGTTTCAAGTTGGAGAAATTGCTTTCCGCATGCAAAACCGCAAAA
GTCCAATTCTAAATCTTTACAAACAACCAGTTCCAAGTTTAGAACAATTAATTATTCCAC
CATTTGAAAGTGATGTTAAAAAATCTTCAATTTTGAGTACACCTAAAGCAAGTACGAAAC
CATCATCGTCCGTAAATTCTTCATCAGTAATATCGGCAGCATCAGTACCATCATCAAGTG
TAACAAGTGTAACACCTCGTCAAAGACCGAAAGCATGTCAATTAAATCCAGTTAGCAATA
ATCAATTTACAATTGGTTTACCACCAAGTCCATCACCGCGAAATGTCCTCTCTTCACCCA
TTGATGCACAAAATTTTAGAGCACCTCAATCAATCAATCATCAGAACCAAACACCAGATA
ATAATTTCAATGCCCAATTCGAAGTTGATTTTACCAATATTAATATTAATCAAACACAAT
CGCAACAACAGCAGCAGCAGCAACCAACTCAAATACAACAGCAGCACCAGCATGTTAGTG
ATGAAACTGCAAAATTTAGCAATTTATTTAAATCTACATTTCCCGATCCATTTGAACACG
ATGACACAGAAGTAGTGCAAATACAAAAAAATTACGTTGAACCGCAAATTGTAAATGAAC
AACAAACATTTGAGAATATGATAGAAAATCAGCAACAACAACAATCGACGGTAAAAGTGA
ATCAGCATCGTCGTTATATGAGTGATACATCAGGATTTAAA

>g10615.t5 Gene=g10615 Length=324
MIDLYTLAQPITTKSDIWAMGCLLYKLCFFSLPFGESTLAIQNGTFTIPDNSRYSTAMHQ
LIRYMLEPDAEKRPNVFQVGEIAFRMQNRKSPILNLYKQPVPSLEQLIIPPFESDVKKSS
ILSTPKASTKPSSSVNSSSVISAASVPSSSVTSVTPRQRPKACQLNPVSNNQFTIGLPPS
PSPRNVLSSPIDAQNFRAPQSINHQNQTPDNNFNAQFEVDFTNININQTQSQQQQQQQPT
QIQQQHQHVSDETAKFSNLFKSTFPDPFEHDDTEVVQIQKNYVEPQIVNEQQTFENMIEN
QQQQQSTVKVNQHRRYMSDTSGFK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g10615.t5 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1 114 2.9E-27
7 g10615.t5 MobiDBLite mobidb-lite consensus disorder prediction 123 169 -
5 g10615.t5 MobiDBLite mobidb-lite consensus disorder prediction 229 252 -
6 g10615.t5 MobiDBLite mobidb-lite consensus disorder prediction 299 324 -
2 g10615.t5 PANTHER PTHR22967:SF57 NUMB-ASSOCIATED KINASE, ISOFORM A 1 307 8.2E-53
3 g10615.t5 PANTHER PTHR22967 SERINE/THREONINE PROTEIN KINASE 1 307 8.2E-53
1 g10615.t5 Pfam PF00069 Protein kinase domain 9 79 4.1E-8
9 g10615.t5 ProSiteProfiles PS50011 Protein kinase domain profile. 1 94 10.874
4 g10615.t5 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 9 142 2.56E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values