General information for g10615.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative BMP-2-inducible protein kinase.
Parent gene
- The parent gene g10615 is located on chr_1: 10760495..10761410 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10615 | g10615.t6 | isoform | g10615.t6 | 10759181 | 10760237 |
| chr_1 | g10615 | g10615.t6 | exon | g10615.t6.exon1 | 10759181 | 10760237 |
| chr_1 | g10615 | g10615.t6 | cds | g10615.t6.CDS1 | 10759202 | 10759507 |
| chr_1 | g10615 | g10615.t6 | TTS | g10615.t6 | 10761040 | 10761040 |
| chr_1 | g10615 | g10615.t6 | TSS | g10615.t6 | NA | NA |
Sequences
>g10615.t6 Gene=g10615 Length=1057
TTATCGTATCGTGCACCAGAAATGATTGATTTATATACACTAGCTCAGCCAATCACAACA
AAGAGTGATATATGGGCAATGGGATGCTTACTCTATAAACTTTGTTTCTTTTCACTTCCC
TTTGGCGAGAGCACGCTCGCTATACAAAATGGAACCTTCACTATTCCTGATAATTCTAGA
TATTCAACAGCTATGCATCAATTAATTCGTTACATGCTTGAACCAGATGCTGAGAAACGA
CCAAACGTGTTTCAAGTTGGAGAAATTGCTTTCCGCATGCAAAACCGCAAAAGTCCAATT
CTAAATCTTTACGTGAGTTTAACTTAAATATTTTTACGATTTGAATTTTTTCATAATAAT
GTGTTTATAATTTTAGAAACAACCAGTTCCAAGTTTAGAACAATTAATTATTCCACCATT
TGAAAGTGATGTTAAAAAATCTTCAATTTTGAGTACACCTAAAGCAAGTACGAAACCATC
ATCGTCCGTAAATTCTTCATCAGTAATATCGGCAGCATCAGTACCATCATCAAGTGTAAC
AAGTGTAACACCTCGTCAAAGACCGAAAGCATGTCAATTAAATCCAGTTAGCAATAATCA
ATTTACAATTGGTTTACCACCAAGTCCATCACCGCGAAATGTCCTCTCTTCACCCATTGA
TGCACAAAATTTTAGAGCACCTCAATCAATCAATCATCAGAACCAAACACCAGATAATAA
TTTCAATGCCCAATTCGAAGTTGATTTTACCAATATTAATATTAATCAAACACAATCGCA
ACAACAGCAGCAGCAGCAACCAACTCAAATACAACAGCAGCACCAGCATGTTAGTGATGA
AACTGCAAAATTTAGCAATTTATTTAAATCTACATTTCCCGATCCATTTGAACACGATGA
CACAGAAGTAGTGCAAATACAAAAAAATTACGTTGAACCGCAAATTGTAAATGAACAACA
AACATTTGAGAATATGATAGAAAATCAGCAACAACAACAATCGACGGTAAAAGTGAATCA
GCATCGTCGTTATATGAGTGATACATCAGGATTTAAA
>g10615.t6 Gene=g10615 Length=101
MIDLYTLAQPITTKSDIWAMGCLLYKLCFFSLPFGESTLAIQNGTFTIPDNSRYSTAMHQ
LIRYMLEPDAEKRPNVFQVGEIAFRMQNRKSPILNLYVSLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10615.t6 | Coils | Coil | Coil | 97 | 101 | - |
| 5 | g10615.t6 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 100 | 5.2E-28 |
| 2 | g10615.t6 | PANTHER | PTHR22967 | SERINE/THREONINE PROTEIN KINASE | 1 | 99 | 1.3E-48 |
| 3 | g10615.t6 | PANTHER | PTHR22967:SF10 | BMP-2-INDUCIBLE PROTEIN KINASE | 1 | 99 | 1.3E-48 |
| 1 | g10615.t6 | Pfam | PF00069 | Protein kinase domain | 9 | 79 | 2.7E-9 |
| 7 | g10615.t6 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 94 | 10.874 |
| 4 | g10615.t6 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 84 | 4.82E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
