Gene loci information

Transcript annotation

  • This transcript has been annotated as Peptidyl-prolyl cis-trans isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10620 g10620.t24 TSS g10620.t24 10782911 10782911
chr_1 g10620 g10620.t24 isoform g10620.t24 10783321 10785135
chr_1 g10620 g10620.t24 exon g10620.t24.exon1 10783321 10783462
chr_1 g10620 g10620.t24 cds g10620.t24.CDS1 10783403 10783462
chr_1 g10620 g10620.t24 exon g10620.t24.exon2 10784400 10784619
chr_1 g10620 g10620.t24 cds g10620.t24.CDS2 10784400 10784619
chr_1 g10620 g10620.t24 exon g10620.t24.exon3 10784684 10784747
chr_1 g10620 g10620.t24 cds g10620.t24.CDS3 10784684 10784747
chr_1 g10620 g10620.t24 exon g10620.t24.exon4 10784809 10785135
chr_1 g10620 g10620.t24 cds g10620.t24.CDS4 10784809 10784929
chr_1 g10620 g10620.t24 TTS g10620.t24 10785316 10785316

Sequences

>g10620.t24 Gene=g10620 Length=753
AGTTCAGTTTAAGAGTTTGACGAGAACGCACGCAGCATTTTCTACAGTCAGCTTACAATT
AATTCGTAATTTTGCAAGCAAAATGGGATTTCCTCGAGTTTTTTTCGATATGGCCGCTGA
TGGTCAAGCACTTGGAAGAATTAAAACATGCGAAAACTTCCGTGCGTTGTGCACCGGCGA
AAAGGGATATGGATATAAAGGTTCAACATTCCACCGTGTCATTCCCAATTTCATGTGTCA
AGGCGGTGACTTTACAAATCACAATGGAACTGGAGGAAAATCAATCTATGGCAACAAGTT
TGAGGATGAGAACTTCACATTGAAGCACACTGGCCCTGGCATTATGTCAATGGCTAATGC
AGGACCAAACACTAATGGTTCTCAGTTCTTCATTACGACTGTGAAAACTAGCTGGTTAGA
CAACAGACACGTAGTTTTCGGATCAGTTGTCGAAGGCATGGATATTGTCAAGAAGATTGA
GTCATATGGATCTCAATCAGGCAAGCCATCAAAGAACATCACTATTGCCAACTCTGGTCA
ACTCTAAGCTGCATCTTAAATAACAATTATATAATACAACACAAAAATATCTCCCCTTTA
TCCTTTATTTCTACATTATTTCTTCTAAAATGCCGCTCATTTTGTCAATGATCAATTGTT
TAAGAGAAAAGTAAAACGCAAATGTTCATTTTTTGTAATTATGAAGTAACAAATTTCAGA
ATTAAAACACTCCAATATACATAAAACATTTAA

>g10620.t24 Gene=g10620 Length=154
MGFPRVFFDMAADGQALGRIKTCENFRALCTGEKGYGYKGSTFHRVIPNFMCQGGDFTNH
NGTGGKSIYGNKFEDENFTLKHTGPGIMSMANAGPNTNGSQFFITTVKTSWLDNRHVVFG
SVVEGMDIVKKIESYGSQSGKPSKNITIANSGQL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10620.t24 CDD cd01926 cyclophilin_ABH_like 4 152 1.20642E-104
10 g10620.t24 Gene3D G3DSA:2.40.100.10 - 2 154 1.2E-73
2 g10620.t24 PANTHER PTHR11071:SF503 PEPTIDYLPROLYL ISOMERASE E (CYCLOPHILIN E) 21 153 4.7E-79
3 g10620.t24 PANTHER PTHR11071 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 21 153 4.7E-79
11 g10620.t24 PIRSF PIRSF001467 Peptidylpro_ismrse 1 154 6.4E-71
8 g10620.t24 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 14 29 1.5E-33
7 g10620.t24 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 55 1.5E-33
5 g10620.t24 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 101 1.5E-33
4 g10620.t24 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 101 113 1.5E-33
6 g10620.t24 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 1.5E-33
1 g10620.t24 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 21 151 2.0E-43
13 g10620.t24 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 38 55 -
14 g10620.t24 ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 153 39.603
9 g10620.t24 SUPERFAMILY SSF50891 Cyclophilin-like 3 154 9.94E-68

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0000413 protein peptidyl-prolyl isomerization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values