General information for g10621.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10621 is located on chr_1: 10785819..10790587 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10621 | g10621.t2 | isoform | g10621.t2 | 10785376 | 10787213 |
| chr_1 | g10621 | g10621.t2 | exon | g10621.t2.exon1 | 10785376 | 10787213 |
| chr_1 | g10621 | g10621.t2 | cds | g10621.t2.CDS1 | 10785819 | 10787213 |
| chr_1 | g10621 | g10621.t2 | TSS | g10621.t2 | NA | NA |
| chr_1 | g10621 | g10621.t2 | TTS | g10621.t2 | NA | NA |
Sequences
>g10621.t2 Gene=g10621 Length=1838
TCTCTTTTTAAACAGTGTGTAACACACTTGCTTAATAAAAATTTTCTTCGTCTCCGAACG
TTTCGTATAACTTAACTGTCATTTTAAAATTTGAATTTTCAGAAAGTCAACTGCGCGCAT
TTTTTAAGTTAAGAGGCCCGCTTTTAAAATTTTAAAACAACCATCAAAGAATTCTATTTT
ATTCAATATCAAGCTAAATATCGATATCTTAAGCAGTATAGTACTGTGTAGTAATTCTCG
ACCGACTCGGCAAATGTAAAATTGGTTAGTTAAAAATCAAAAAAGTGTTAAAAATCATCT
AATATTATCATGTTTGAGTGATCAATCACATTTTTCATCGCTCGCGAAAAAAAACTCCTG
CAAAGTTCTCATTTTACATTTTTTAAGCCAACAGAATATAATTCAACGGGATAGAGATAA
CTATAATCAACAAACATAGCGCCATGCGAAAGTCTGCAGATGCAATCGATGAAATAAAAG
AAATAAAAAATATCAGTGGAAGAAGAAGCATTCGAGAAGGAGTAGACAATTACATTTATG
ATGAAACGCTTCTGAATCGCAAAAAAGCGATTAATAACAATGAAGATAGATCAATTTCAG
AGCCGCCACAATCACGATATAACAATCATACTGTCAGTGACTCTGTGAGACTGAAAACAA
TTCGTGAAAAGATGGACGACGACAACAATCAATGTTCTTCAGACGAAGACTTGTCAAAAT
CAAATAGTCAACTAAATGGAAGTGATCTAGATCTCGAAATACCCGAAAGTGCATCGCAAA
CACCTACTCCAACTCCATTAAATCAATTAATGGGTGGAAATGCAAGAAGAATCAATAGTG
AAACAAATCTCAACGACTCAAAGAGACGACTTACTGGATTTATGGGAAACAAAAGTAAAC
GTTTTTGTGCTTCAACGAGTGAATTAAGTTTTTCATCACATCTAGAAACAAACAAATCCC
TCTTTTCGCCAAAAAATAATCGAGGAAGTCGATCTGGAAGTCTTTATGGCAGCAACATGT
CATTAAATAGTAGCAACAATAGTCGATTGTTCATGGTCAATTCACCTTTCTATAATGGAA
AGACAACGTTTGGAGGAGCTTCTGCTTATCCACGAAAAGATATCAATCAACACAAGATAC
TCAGAAATCCGATACAAATGAGACCATCATCAAGTCTATCAAATTCGTCAAACACATCTA
CAAAATCTGAAGGAGCTGCTGGATATAATATGCCTGAATCAAATGCAGCAAAGCGAATTT
TAGAAATTATGACGCAATTTAGTGGTCCACTTAAAGAAACGCGAAATATGGGTAATAATA
TTAATTCTATGATGAAAATTCCAGGATTAGTGCAAAATCGTAAACGTTTTGGTGAAGAAG
ATTTGCAGTTGAATCGTAGTATTGCTCTATCAAGACCTTCAGCACCATATGCTCGATCAA
TTGGAGGAACACAAACAGCAGCACCACCAAAAAATACTCCAGAATCAATTGCGTCATCAT
TGCTGAATACATCAAGTCCTTCACCTCAAATACCTACAATGTCGCAACTATTGAAAATGA
AAAGACTTCAAAATTATACAGAACGTGCACGTGAAATTGCAAATCGATCTGAAAACTTCC
TTAATCAAGTGCATGAGTACAAATTACCATCTTCAAATGATGATTTTGAAAGTAAACGAG
GCGGCTCAACAATGGAAAATAATTCAAGTTCATCTTCATTACTAAAAATGAAGAATAATA
TTACGAAAAATTTATTGAGAAATGACAAAACAGTTTTTGATCAGCCTCCAGAGCCCTTAA
ATTTGCCGAATATTCAATTGCCTGAATTAAAGTCTTAT
>g10621.t2 Gene=g10621 Length=465
MRKSADAIDEIKEIKNISGRRSIREGVDNYIYDETLLNRKKAINNNEDRSISEPPQSRYN
NHTVSDSVRLKTIREKMDDDNNQCSSDEDLSKSNSQLNGSDLDLEIPESASQTPTPTPLN
QLMGGNARRINSETNLNDSKRRLTGFMGNKSKRFCASTSELSFSSHLETNKSLFSPKNNR
GSRSGSLYGSNMSLNSSNNSRLFMVNSPFYNGKTTFGGASAYPRKDINQHKILRNPIQMR
PSSSLSNSSNTSTKSEGAAGYNMPESNAAKRILEIMTQFSGPLKETRNMGNNINSMMKIP
GLVQNRKRFGEEDLQLNRSIALSRPSAPYARSIGGTQTAAPPKNTPESIASSLLNTSSPS
PQIPTMSQLLKMKRLQNYTERAREIANRSENFLNQVHEYKLPSSNDDFESKRGGSTMENN
SSSSSLLKMKNNITKNLLRNDKTVFDQPPEPLNLPNIQLPELKSY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10621.t2 | Coils | Coil | Coil | 375 | 395 | - |
| 6 | g10621.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 65 | - |
| 4 | g10621.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 65 | - |
| 2 | g10621.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 260 | - |
| 1 | g10621.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 260 | - |
| 5 | g10621.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 426 | - |
| 3 | g10621.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 465 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
