Gene loci information

Transcript annotation

  • This transcript has been annotated as Acyl-CoA Delta(11) desaturase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10639 g10639.t2 TSS g10639.t2 10991321 10991321
chr_1 g10639 g10639.t2 isoform g10639.t2 10991322 10996847
chr_1 g10639 g10639.t2 exon g10639.t2.exon1 10991322 10991482
chr_1 g10639 g10639.t2 exon g10639.t2.exon2 10994339 10994487
chr_1 g10639 g10639.t2 cds g10639.t2.CDS1 10994355 10994487
chr_1 g10639 g10639.t2 exon g10639.t2.exon3 10994864 10995332
chr_1 g10639 g10639.t2 cds g10639.t2.CDS2 10994864 10995332
chr_1 g10639 g10639.t2 exon g10639.t2.exon4 10995782 10996014
chr_1 g10639 g10639.t2 cds g10639.t2.CDS3 10995782 10996014
chr_1 g10639 g10639.t2 exon g10639.t2.exon5 10996076 10996360
chr_1 g10639 g10639.t2 cds g10639.t2.CDS4 10996076 10996360
chr_1 g10639 g10639.t2 exon g10639.t2.exon6 10996450 10996847
chr_1 g10639 g10639.t2 cds g10639.t2.CDS5 10996450 10996520
chr_1 g10639 g10639.t2 TTS g10639.t2 10996840 10996840

Sequences

>g10639.t2 Gene=g10639 Length=1695
ACTCTTCGGGTACGCTTTGTAGTGATCGGATGTTAGTTGAGTGTTTTCCCGAATGGTTGA
CACTTAAATTGAGCAAAAAGAAAATTCTTGTAGATAAGACAAGTGATTTAATGAAAGTAA
TAAATTGATAAGAAAATTTGTTAATTGATTAAAATTAGAAGATAAAAAATTTCGAATATG
GATTCAAATTTGCATGAATCAATATGCCATCCCGAGGGTAAACAAAATGGATATGTAAAT
GGGAATATTGTTGCCAATAGCAATTATAGCAATGGAATTAAAAATGGAGAAATCAAGAAT
GGTCATGCAGGAACATCTACAGAGCAAAAACAAGAATACAAAATGCAAATAAAGTGGCTG
AATGTGCTACTCTTTGCTTATTTACATGGAGCAGCTTTATATGGAATGATAATGCCATGG
AAATGGTCATCATTTGCAGTTTGTTTTGTCTATACAGCTTTAGCGGGTTTTGGAACAACT
GTTGCTGCACATCGATATTTTACACATCGAAGTTTCAAGGCTAACAAGAAATTGAGATGG
ATTCTTATAATTTTACAAACAACATGTGCTCAGGAACCAATTTTAAATTGGGCTCGTGAT
CATCGTGTTCATCATAAATTTACAGACACTGATGCTGATCCATATAATTCAAGGCGAGGT
TTCTTTTTCTCACATATTGGTTGGTTGATGGTTAAAAAACATCCTGAAGTTATCAGACAA
GGAAAGAAAATTGATATGAGTGACCTTGAGAGTGATCCTATGCTTCAATTCCAAAGAAGG
TGGTATCATTTGCTTGCTTTCCTTTTAAACCTTGGCATTCCGATTGTTTTTTTGACATAC
ATGGGCGAGCCATTTTCAGTCATTTGGCACGGAAATATTTTCCGTTGGGTTATTCAACTC
AATCTTGTATGGTGTGTTAACTCCGTGGCTCATCTCTATGGCACAAAGCCTTATGACAAA
GACATTTCACCGACTGATTCACGTCTAGTTGGATTTTTAGCTATGGGAGAAGGCTGGCAT
AATTATCACCATGTGTTTCCTTGGGACTACAAGACAGCAGAACTTCCAGGATACGGTTGG
AACTTGTCAACTGCTGTCATTGATTTCTTCGCATGGTTAGGCTGGGCTACAGAATTGAAA
ACTGTTCCTGATGCAATAATTAAAAAGCGCGTACTAAGAACTGGTGATGGCAGTCATCCA
TATTCAATTGCGGCAGTTGAAGAGAATAATAATAATCTTAGCGATGAGATCGACGCACAA
ACGCAAATAAGAGATACTGAGCATTTTTGGGGCTTTGGTGACAAAGAAATGACATCAGAA
GATATGAAATATGTACACATCATTAATCCAGAGAAGAAAATTTCTTAAAAAGATTTTTTG
CGCGTTACAATCCTAAATATGCTATGTGATGATGCCTTCAGATAACTTAACTAGTTTTTA
AGATTTTATCCTTTTTAGTAATTTTAGTTAAGTTATTATCGTGTATTTTCAATTATTTTT
GAATGAAACATACGATGTGTATGTATTAAGGTAGTTTTCTTATTTCTTGTTACCATTGAT
CCCTTATCCCTTAAATGTTTTGTGTGCCGCAAATTTTTAAATATTTTGTATTCTTAGTGT
AAATTCAATTAACTTAACAATGCCAGAACAATTTTTTTTCAACAAAGAAATAAAGGATAA
GAAACAGGTCAAAAA

>g10639.t2 Gene=g10639 Length=396
MDSNLHESICHPEGKQNGYVNGNIVANSNYSNGIKNGEIKNGHAGTSTEQKQEYKMQIKW
LNVLLFAYLHGAALYGMIMPWKWSSFAVCFVYTALAGFGTTVAAHRYFTHRSFKANKKLR
WILIILQTTCAQEPILNWARDHRVHHKFTDTDADPYNSRRGFFFSHIGWLMVKKHPEVIR
QGKKIDMSDLESDPMLQFQRRWYHLLAFLLNLGIPIVFLTYMGEPFSVIWHGNIFRWVIQ
LNLVWCVNSVAHLYGTKPYDKDISPTDSRLVGFLAMGEGWHNYHHVFPWDYKTAELPGYG
WNLSTAVIDFFAWLGWATELKTVPDAIIKKRVLRTGDGSHPYSIAAVEENNNNLSDEIDA
QTQIRDTEHFWGFGDKEMTSEDMKYVHIINPEKKIS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
23 g10639.t2 CDD cd03505 Delta9-FADS-like 82 321 3.91295E-69
13 g10639.t2 Coils Coil Coil 344 364 -
2 g10639.t2 PANTHER PTHR11351 ACYL-COA DESATURASE 48 342 3.3E-113
3 g10639.t2 PANTHER PTHR11351:SF91 DESATURASE 1, ISOFORM A-RELATED 48 342 3.3E-113
8 g10639.t2 PRINTS PR00075 Fatty acid desaturase family 1 signature 60 80 3.6E-43
6 g10639.t2 PRINTS PR00075 Fatty acid desaturase family 1 signature 105 125 3.6E-43
7 g10639.t2 PRINTS PR00075 Fatty acid desaturase family 1 signature 142 171 3.6E-43
5 g10639.t2 PRINTS PR00075 Fatty acid desaturase family 1 signature 234 255 3.6E-43
4 g10639.t2 PRINTS PR00075 Fatty acid desaturase family 1 signature 277 291 3.6E-43
1 g10639.t2 Pfam PF00487 Fatty acid desaturase 83 288 2.9E-17
16 g10639.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 59 -
21 g10639.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 60 78 -
18 g10639.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 79 83 -
20 g10639.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 84 108 -
15 g10639.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 109 201 -
19 g10639.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 202 222 -
17 g10639.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 223 233 -
22 g10639.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 234 254 -
14 g10639.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 255 396 -
9 g10639.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 60 79 -
11 g10639.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 83 105 -
12 g10639.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 202 224 -
10 g10639.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 234 256 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF
GO:0006629 lipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed