General information for g10639.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acyl-CoA Delta(11) desaturase.
Parent gene
- The parent gene g10639 is located on chr_1: 10995780..10996847 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10639 | g10639.t3 | isoform | g10639.t3 | 10995780 | 10996847 |
| chr_1 | g10639 | g10639.t3 | exon | g10639.t3.exon1 | 10995780 | 10996014 |
| chr_1 | g10639 | g10639.t3 | cds | g10639.t3.CDS1 | 10995843 | 10996014 |
| chr_1 | g10639 | g10639.t3 | exon | g10639.t3.exon2 | 10996076 | 10996360 |
| chr_1 | g10639 | g10639.t3 | cds | g10639.t3.CDS2 | 10996076 | 10996360 |
| chr_1 | g10639 | g10639.t3 | exon | g10639.t3.exon3 | 10996450 | 10996847 |
| chr_1 | g10639 | g10639.t3 | cds | g10639.t3.CDS3 | 10996450 | 10996520 |
| chr_1 | g10639 | g10639.t3 | TTS | g10639.t3 | 10996840 | 10996840 |
| chr_1 | g10639 | g10639.t3 | TSS | g10639.t3 | NA | NA |
Sequences
>g10639.t3 Gene=g10639 Length=918
AGGTGGTATCATTTGCTTGCTTTCCTTTTAAACCTTGGCATTCCGATTGTTTTTTTGACA
TACATGGGCGAGCCATTTTCAGTCATTTGGCACGGAAATATTTTCCGTTGGGTTATTCAA
CTCAATCTTGTATGGTGTGTTAACTCCGTGGCTCATCTCTATGGCACAAAGCCTTATGAC
AAAGACATTTCACCGACTGATTCACGTCTAGTTGGATTTTTAGCTATGGGAGAAGGCTGG
CATAATTATCACCATGTGTTTCCTTGGGACTACAAGACAGCAGAACTTCCAGGATACGGT
TGGAACTTGTCAACTGCTGTCATTGATTTCTTCGCATGGTTAGGCTGGGCTACAGAATTG
AAAACTGTTCCTGATGCAATAATTAAAAAGCGCGTACTAAGAACTGGTGATGGCAGTCAT
CCATATTCAATTGCGGCAGTTGAAGAGAATAATAATAATCTTAGCGATGAGATCGACGCA
CAAACGCAAATAAGAGATACTGAGCATTTTTGGGGCTTTGGTGACAAAGAAATGACATCA
GAAGATATGAAATATGTACACATCATTAATCCAGAGAAGAAAATTTCTTAAAAAGATTTT
TTGCGCGTTACAATCCTAAATATGCTATGTGATGATGCCTTCAGATAACTTAACTAGTTT
TTAAGATTTTATCCTTTTTAGTAATTTTAGTTAAGTTATTATCGTGTATTTTCAATTATT
TTTGAATGAAACATACGATGTGTATGTATTAAGGTAGTTTTCTTATTTCTTGTTACCATT
GATCCCTTATCCCTTAAATGTTTTGTGTGCCGCAAATTTTTAAATATTTTGTATTCTTAG
TGTAAATTCAATTAACTTAACAATGCCAGAACAATTTTTTTTCAACAAAGAAATAAAGGA
TAAGAAACAGGTCAAAAA
>g10639.t3 Gene=g10639 Length=175
MGEPFSVIWHGNIFRWVIQLNLVWCVNSVAHLYGTKPYDKDISPTDSRLVGFLAMGEGWH
NYHHVFPWDYKTAELPGYGWNLSTAVIDFFAWLGWATELKTVPDAIIKKRVLRTGDGSHP
YSIAAVEENNNNLSDEIDAQTQIRDTEHFWGFGDKEMTSEDMKYVHIINPEKKIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10639.t3 | CDD | cd03505 | Delta9-FADS-like | 9 | 100 | 2.99771E-34 |
| 5 | g10639.t3 | Coils | Coil | Coil | 123 | 143 | - |
| 1 | g10639.t3 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 2 | 121 | 5.0E-49 |
| 2 | g10639.t3 | PANTHER | PTHR11351:SF91 | DESATURASE 1, ISOFORM A-RELATED | 2 | 121 | 5.0E-49 |
| 4 | g10639.t3 | PRINTS | PR00075 | Fatty acid desaturase family 1 signature | 13 | 34 | 1.0E-13 |
| 3 | g10639.t3 | PRINTS | PR00075 | Fatty acid desaturase family 1 signature | 56 | 70 | 1.0E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed