General information for g10646.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Toll-like receptor Tollo.
Parent gene
- The parent gene g10646 is located on chr_1: 11061357..11065783 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10646 | g10646.t1 | TSS | g10646.t1 | 11060777 | 11060777 |
| chr_1 | g10646 | g10646.t1 | isoform | g10646.t1 | 11061357 | 11065783 |
| chr_1 | g10646 | g10646.t1 | exon | g10646.t1.exon1 | 11061357 | 11061937 |
| chr_1 | g10646 | g10646.t1 | cds | g10646.t1.CDS1 | 11061357 | 11061937 |
| chr_1 | g10646 | g10646.t1 | exon | g10646.t1.exon2 | 11062036 | 11062325 |
| chr_1 | g10646 | g10646.t1 | cds | g10646.t1.CDS2 | 11062036 | 11062325 |
| chr_1 | g10646 | g10646.t1 | exon | g10646.t1.exon3 | 11062521 | 11065783 |
| chr_1 | g10646 | g10646.t1 | cds | g10646.t1.CDS3 | 11062521 | 11065783 |
| chr_1 | g10646 | g10646.t1 | TTS | g10646.t1 | NA | NA |
Sequences
>g10646.t1 Gene=g10646 Length=4134
ATGAAGAAATGGATTACAATTTATTTTGCACTGCATTGCTTGTGTTATGTTAATAGCACT
AATAAATTATTAGATAGCTTATATGATTCGTCGCATCAGCAACAACAGCAGCAACAACAG
AAAGTTGATTGCACATGGAGACAAAGACAAAATTCAGTGCAAAATGCAGTCGATGATAGT
AGTCGATATTTATCATGTAGAATGAAGACCATCAGTGGATTAGATGGCCTAATAAGAAAT
TTAACAAACTTCAATAGTCAAAATCAAGTAGTGAATGCTTTGAAATTAGAATGTAGTGAT
GTGCTGTTTGCTGAAAGTTCTCTACTTGTTGAGAATAATAATAATGGTGATGCAGCAGTT
GATTATGGTGCCTTCAATAAGCATTTGCATGAGCTAACATTACAATATTGTAAAATTAAA
TATGTTCCAGCCATGACATTCAGACCACTTAAAAATCTCAAAAGTCTCACATTGCAGACA
CATAATGCCGATTGGTCGACAATCAATCTTGAATTGCATGCAGAAACTTTCACTGGATTG
AGTGAATTACGAAGACTTAATCTTGCTGATAATAACATTTGTGCACAAAGTAACACAAAT
GATGATAATGACCTGTTACCATCATCAACTGCTCCAACAATTTCAACATGCAATACAGGC
ATTGAACAAGTTGATTTGTCATACAAACATCTTATTAGCATCCCAAATAATTGCTTCACT
GCACTCCGTTCACTTAATTTCCTACATTTGGATAGCAATCAATTGACAATTCTTGATGAT
AATTCATTCAAAGGATTAGATAAATTGCAATTTTTAAATCTAACTAATAATCGACTTATC
ACACTGCCACCAGAATTATTTGAAAAGACACTCGATCAATTTGTATTTCGTGAACTCTAT
GAATTGCAAGCATTAAATTTAGAATCAAATCAAATTGAAATGATTGCACAAAATGCATTT
ATTGATTTAAGAAATTTACATCAATTACTTTTGTCAAATAATCAATTAAAAGTGATCGAA
TCGAAGCATTTTGCTGGACTTTATTCATTAAATCAGCTCATCTTAGAATCAAATGAAATT
TCAAATATTCATCCAACTGCATTTGATCATCTCATCAATTCTGTCGTTGATTTAAGTTTA
AATGATAACAAATTAAAAAGAATTCCTGATTCAATAAAGAAATTGAGAAATTTACAAGCT
TTAGATTTGGGTAAAAATCAAATAAGTGAAATTGAAAGTGACTCATTTGATGGATTAGAA
ACACTTGCTGGCTTAAGATTGACTGAATATCAAATTACACGCATCACAAAAGGTGCATTT
GTTGCACTCAAATCAATTCATGTGCTCAATTTTGCATCAAATAAAATCAGACATGTCGAT
CAGTCTGCATTTTTATCAAATGAGAAATTGCGTGCCATTCGATTAGACAGTAATGCATTG
GAGGACATTTCGAGTGCTTTCACATCACTATCATCATTGGTGCTATTGAATGTGTCAAAT
AACAACATCAAATGGTTTGATTTTAGTCATTTACCAGCATCACTTGAATGGCTTGATATT
CATAACAACAACATTACTGAATTGGGCAATTATTTTGATGTGACAAGTCAGTTGCGCATA
AATTACTTAGATGTGTCAAATAATAAAATTAGAAAAGTCAAAAATGATCTCATTCCAAAG
AATATTACAACAATTAATTTGAGCAACAATCTCATTGATGAAATTCCATCTGGAACATTT
TTAAATAAGAAACATCTTCGAAAAGTGCACTTGAGCGGCAATATGATTCGTAAATTGCAG
ATAACTTCACTCATTGTGTCCAAATTTGATATTTTACGAGAACCACCAGAAATTTATTTG
GCTGCAAATCCATTGCATTGTGATTGCCATTTAGAATGGCTTAGAAATATCAATGAATTG
TCAGAACAAAGAAGACAATTGCCAAAATTACTTGATATGAGTAAAATCAAGTGCACAATG
GAACATAGTCATGAAATGATTCGCAGTTCAACTGATGAAGTCGCTATAAAATCATTCAAT
GAGCTCAGTTCGAATGATTTTCTTTGTAAATATGAAAATCACTGTCATACACTCTGTCAA
TGTTGCAAAAATAATGATGATGGTAATAATGATGATGATAATGGCAGTGATGAGGAAGAA
GCAGAATGCAAATGTAAAATGACTTGTCCAGATCAATGCTCATGTTATCATGACAACACA
TGGAATAAAAATATTGTTGATTGTGGAAATGCTAATATGCAAACATTTCCACATCGTGTG
CCAATTGATGTGACCACTTTCTATCTCGATGGCAATAATCTTACACATTTATCACATCAT
CAATTTGTAGGCAAAAATAGACTTGAAGTTTTATACTTAAATGATAGCAACATTCATACA
ATTGCTAATGGAACATTTGATGAACTTAAAAGTCTTCGAGTTTTACATTTAAATCGTAAT
CAATTGAAAAGACTTCATGGAAATGAATTTAAAGAATTGCAATTGCTAAATGAGCTCTAT
TTGGACCATAATAAACTCACACATATTGGTGATAATGCATTTAGTCATATGAAATTTCTT
CGTACAATTGATTTAAGTGACAATCGTTTGGTTGATTTCAATCCGATAACACAACTGTCA
ACAGCAAGTCGTAGTGGAATGTTGTCACAAGTATATTTAGATGGTGATAATAAATGGAAT
TGTGATTGCAAGAGTTTAGTCCAGTTAATCGAATGGATCAAAAATCGTTCAAATAATTTC
AATGTTCAACGAATGCTCTGCAATGATAATCGAATTGTTGGCGATGTACTCAACAATTGC
CATCTCATCATGAACACAAACATCTTTGGTAACGAGTTTGCAACTCCACCATCATCGTTG
AACTCACTTCAACAACAGCATTCGACCATCAACGCCAACAATGTTCATCGTCATCATCCA
TTCAGCAATGTCGGTAGTGGTGGATATATTCCACTTTTTGCAGCTATTCTTGTCACTGTC
ATAACTTCAGCATTGTTGATTGCACTCGTATGTATCTTCAGACAGGATGTCAAGTTATGG
GCATTCTCAAAATATGGCATTCGTTTTGGTGGCGATGGAACAAGCAAAAATAGTGGAAAT
GGCAAGAAACAAACTTTGAATCATCATCGCTATAATGCAAATGCAGCAGCAACAGCAGCA
GATGAAGAATATTATGCAGAAAAAATTTATGATGCATATTGCATTTATTCAATCAATGAC
ACAGACTTGTTGACTCAAATTTTATTACCAGAAATGCAAAATCTTGGCTATAATGTTTCA
CTTTTTAATCATCATAATAAACCAATTATGGCAAGAGATAATTTTCAAGTGACCAACTAT
TTAATCGATACACTCAAGACTGGAACAGATGCATCGCATAAACTTGTAATAGTTTTGTCT
TTCAACTTCTTGCAGACTGAATGGTGCGATAATAATTTCCGTTGTGCTATGCAAGCACTC
ATCGACTCAATGATGAATCAACGAACTAACAAAAATATCATTCTCATTCTTACCGTGCCA
GTTCAAATAATTCAAATGGATCCACTTCTTCAACTTCTAATACGCACATGCACGATCATA
TGTTGGGGTGAAAAACGTTTCTGGACTAAATTACGCTATGCATTGCCGGATGTCTCGAAT
GATAAGAAATACATACAGAGCGATAATCGATATACGAGAGAACCCACATCGACACTTCAA
CGTGGTCCAATGATGATGGTTGCGTCAAGTGTTAGCAACAATCAGCACGCAGATTGGTAT
AATTTGTCACCTGTCGTGTGCAGTGGCTACTCAATGCCTATTAATCAATACCAAGAGCCA
CAGCAACATCAGCAGCCGTTTTATCATCATCAACAGTATCAAAATGATGCGCCAAACAAT
TATCGACGTGAATCGTACGATTATGAGCAGCCAGATGATTATAACACACGTGGACCACAA
TCGATAGGCGGTTCATCGACATGTCTCGGTCATGTATATTCAACCATCCCTGAAACACCG
CCACTATCGTCCTCATCAAATGCTTCATCGCCGTCATTGTCACACAAGCACGGCAAAGCT
AGTCACTTGATAGAACAGCAACAGCATTCATCAAATAACGACCACTTTGTATAG
>g10646.t1 Gene=g10646 Length=1377
MKKWITIYFALHCLCYVNSTNKLLDSLYDSSHQQQQQQQQKVDCTWRQRQNSVQNAVDDS
SRYLSCRMKTISGLDGLIRNLTNFNSQNQVVNALKLECSDVLFAESSLLVENNNNGDAAV
DYGAFNKHLHELTLQYCKIKYVPAMTFRPLKNLKSLTLQTHNADWSTINLELHAETFTGL
SELRRLNLADNNICAQSNTNDDNDLLPSSTAPTISTCNTGIEQVDLSYKHLISIPNNCFT
ALRSLNFLHLDSNQLTILDDNSFKGLDKLQFLNLTNNRLITLPPELFEKTLDQFVFRELY
ELQALNLESNQIEMIAQNAFIDLRNLHQLLLSNNQLKVIESKHFAGLYSLNQLILESNEI
SNIHPTAFDHLINSVVDLSLNDNKLKRIPDSIKKLRNLQALDLGKNQISEIESDSFDGLE
TLAGLRLTEYQITRITKGAFVALKSIHVLNFASNKIRHVDQSAFLSNEKLRAIRLDSNAL
EDISSAFTSLSSLVLLNVSNNNIKWFDFSHLPASLEWLDIHNNNITELGNYFDVTSQLRI
NYLDVSNNKIRKVKNDLIPKNITTINLSNNLIDEIPSGTFLNKKHLRKVHLSGNMIRKLQ
ITSLIVSKFDILREPPEIYLAANPLHCDCHLEWLRNINELSEQRRQLPKLLDMSKIKCTM
EHSHEMIRSSTDEVAIKSFNELSSNDFLCKYENHCHTLCQCCKNNDDGNNDDDNGSDEEE
AECKCKMTCPDQCSCYHDNTWNKNIVDCGNANMQTFPHRVPIDVTTFYLDGNNLTHLSHH
QFVGKNRLEVLYLNDSNIHTIANGTFDELKSLRVLHLNRNQLKRLHGNEFKELQLLNELY
LDHNKLTHIGDNAFSHMKFLRTIDLSDNRLVDFNPITQLSTASRSGMLSQVYLDGDNKWN
CDCKSLVQLIEWIKNRSNNFNVQRMLCNDNRIVGDVLNNCHLIMNTNIFGNEFATPPSSL
NSLQQQHSTINANNVHRHHPFSNVGSGGYIPLFAAILVTVITSALLIALVCIFRQDVKLW
AFSKYGIRFGGDGTSKNSGNGKKQTLNHHRYNANAAATAADEEYYAEKIYDAYCIYSIND
TDLLTQILLPEMQNLGYNVSLFNHHNKPIMARDNFQVTNYLIDTLKTGTDASHKLVIVLS
FNFLQTEWCDNNFRCAMQALIDSMMNQRTNKNIILILTVPVQIIQMDPLLQLLIRTCTII
CWGEKRFWTKLRYALPDVSNDKKYIQSDNRYTREPTSTLQRGPMMMVASSVSNNQHADWY
NLSPVVCSGYSMPINQYQEPQQHQQPFYHHQQYQNDAPNNYRRESYDYEQPDDYNTRGPQ
SIGGSSTCLGHVYSTIPETPPLSSSSNASSPSLSHKHGKASHLIEQQQHSSNNDHFV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g10646.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 196 | 2.6E-9 |
| 19 | g10646.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 197 | 293 | 6.9E-14 |
| 20 | g10646.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 294 | 410 | 4.1E-24 |
| 18 | g10646.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 411 | 559 | 1.2E-26 |
| 21 | g10646.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 560 | 692 | 2.3E-17 |
| 22 | g10646.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 719 | 947 | 3.7E-40 |
| 17 | g10646.t1 | Gene3D | G3DSA:3.40.50.10140 | - | 1065 | 1216 | 1.6E-26 |
| 59 | g10646.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1339 | 1377 | - |
| 60 | g10646.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1339 | 1356 | - |
| 6 | g10646.t1 | PANTHER | PTHR45836:SF8 | TOLL-LIKE RECEPTOR 6 | 56 | 194 | 2.1E-275 |
| 9 | g10646.t1 | PANTHER | PTHR45836 | SLIT HOMOLOG | 56 | 194 | 2.1E-275 |
| 7 | g10646.t1 | PANTHER | PTHR45836:SF8 | TOLL-LIKE RECEPTOR 6 | 228 | 288 | 2.1E-275 |
| 10 | g10646.t1 | PANTHER | PTHR45836 | SLIT HOMOLOG | 228 | 288 | 2.1E-275 |
| 5 | g10646.t1 | PANTHER | PTHR45836:SF8 | TOLL-LIKE RECEPTOR 6 | 291 | 1233 | 2.1E-275 |
| 8 | g10646.t1 | PANTHER | PTHR45836 | SLIT HOMOLOG | 291 | 1233 | 2.1E-275 |
| 3 | g10646.t1 | Pfam | PF13855 | Leucine rich repeat | 222 | 279 | 1.0E-9 |
| 1 | g10646.t1 | Pfam | PF13855 | Leucine rich repeat | 324 | 385 | 2.1E-9 |
| 2 | g10646.t1 | Pfam | PF13855 | Leucine rich repeat | 422 | 480 | 2.2E-8 |
| 4 | g10646.t1 | Pfam | PF13855 | Leucine rich repeat | 811 | 870 | 4.5E-12 |
| 27 | g10646.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 28 | g10646.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 29 | g10646.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 32 | g10646.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 25 | g10646.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 988 | - |
| 30 | g10646.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 989 | 1013 | - |
| 24 | g10646.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1014 | 1172 | - |
| 31 | g10646.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1173 | 1194 | - |
| 26 | g10646.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1195 | 1377 | - |
| 69 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 128 | 149 | 5.271 |
| 71 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 182 | 203 | 5.425 |
| 77 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 244 | 265 | 6.257 |
| 76 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 268 | 289 | 7.673 |
| 67 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 301 | 322 | 6.48 |
| 79 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 325 | 346 | 7.073 |
| 74 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 349 | 370 | 6.118 |
| 73 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 374 | 395 | 6.072 |
| 78 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 397 | 418 | 7.966 |
| 81 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 445 | 466 | 6.364 |
| 63 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 469 | 490 | 5.625 |
| 66 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 492 | 512 | 6.01 |
| 64 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 514 | 535 | 7.997 |
| 68 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 539 | 560 | 5.794 |
| 65 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 561 | 582 | 8.028 |
| 62 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 585 | 605 | 5.625 |
| 70 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 763 | 784 | 5.055 |
| 61 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 787 | 808 | 5.44 |
| 75 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 811 | 832 | 6.819 |
| 80 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 835 | 856 | 7.227 |
| 72 | g10646.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 859 | 880 | 7.327 |
| 82 | g10646.t1 | ProSiteProfiles | PS50104 | TIR domain profile. | 1068 | 1218 | 18.329 |
| 47 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 127 | 149 | 180.0 |
| 34 | g10646.t1 | SMART | SM00364 | LRR_bac_2 | 242 | 261 | 170.0 |
| 51 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 242 | 265 | 0.015 |
| 36 | g10646.t1 | SMART | SM00364 | LRR_bac_2 | 266 | 286 | 32.0 |
| 43 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 266 | 289 | 0.007 |
| 52 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 299 | 322 | 0.25 |
| 46 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 323 | 346 | 0.9 |
| 57 | g10646.t1 | SMART | SM00365 | LRR_sd22_2 | 323 | 344 | 120.0 |
| 41 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 347 | 370 | 0.06 |
| 53 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 372 | 394 | 360.0 |
| 48 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 395 | 418 | 0.0025 |
| 56 | g10646.t1 | SMART | SM00365 | LRR_sd22_2 | 395 | 416 | 6.6 |
| 50 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 443 | 466 | 14.0 |
| 45 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 490 | 518 | 43.0 |
| 39 | g10646.t1 | SMART | SM00364 | LRR_bac_2 | 512 | 531 | 12.0 |
| 35 | g10646.t1 | SMART | SM00364 | LRR_bac_2 | 559 | 578 | 110.0 |
| 42 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 560 | 582 | 22.0 |
| 40 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 787 | 808 | 140.0 |
| 38 | g10646.t1 | SMART | SM00364 | LRR_bac_2 | 809 | 828 | 420.0 |
| 44 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 809 | 832 | 0.032 |
| 58 | g10646.t1 | SMART | SM00365 | LRR_sd22_2 | 809 | 830 | 510.0 |
| 37 | g10646.t1 | SMART | SM00364 | LRR_bac_2 | 833 | 852 | 390.0 |
| 49 | g10646.t1 | SMART | SM00369 | LRR_typ_2 | 833 | 856 | 0.0021 |
| 55 | g10646.t1 | SMART | SM00365 | LRR_sd22_2 | 833 | 854 | 550.0 |
| 54 | g10646.t1 | SMART | SM00365 | LRR_sd22_2 | 857 | 878 | 630.0 |
| 14 | g10646.t1 | SUPERFAMILY | SSF52058 | L domain-like | 59 | 284 | 1.46E-12 |
| 13 | g10646.t1 | SUPERFAMILY | SSF52058 | L domain-like | 214 | 520 | 4.93E-43 |
| 12 | g10646.t1 | SUPERFAMILY | SSF52058 | L domain-like | 469 | 637 | 6.8E-24 |
| 15 | g10646.t1 | SUPERFAMILY | SSF52058 | L domain-like | 744 | 918 | 1.02E-26 |
| 11 | g10646.t1 | SUPERFAMILY | SSF52200 | Toll/Interleukin receptor TIR domain | 1061 | 1220 | 6.28E-21 |
| 16 | g10646.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 33 | g10646.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 991 | 1013 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
