General information for g10661.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclin-dependent kinase 9.
Parent gene
- The parent gene g10661 is located on chr_1: 11233961..11236548 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10661 | g10661.t3 | isoform | g10661.t3 | 11233403 | 11233961 |
| chr_1 | g10661 | g10661.t3 | exon | g10661.t3.exon1 | 11233403 | 11233424 |
| chr_1 | g10661 | g10661.t3 | cds | g10661.t3.CDS1 | 11233412 | 11233424 |
| chr_1 | g10661 | g10661.t3 | exon | g10661.t3.exon2 | 11233483 | 11233961 |
| chr_1 | g10661 | g10661.t3 | cds | g10661.t3.CDS2 | 11233483 | 11233961 |
| chr_1 | g10661 | g10661.t3 | TSS | g10661.t3 | NA | NA |
| chr_1 | g10661 | g10661.t3 | TTS | g10661.t3 | NA | NA |
Sequences
>g10661.t3 Gene=g10661 Length=501
CCTGTTGACATGTGGGGAGCAGGATGCATTATGGCTGAAATGTGGACAAGATCTCCTATA
ATGCAAGGCTCCACAGAGCAACAACAACTTACTCTTTGCGCTCAACTATGTGGTTCATTC
ACAACTGATGTATGGCCTGGTCTTGATAAATTAGAACTATATCATAAAATGGAACTTCCA
CAAAATCATAAAAGAAAAGTTAAAGAACGTTTGCGACCTTATGTTAAGGATCAAGCAGCC
GTTGACCTTCTTGATCAATTGTTAATTTTAAATCCTGAAAAAAGAATAAATGCTGACGAT
GCATTAATGCATGATTTTTTTTGGATAGATCCGATGCCAGCTGACTTGACAAAAATGTTG
TCTCAGCTGACACAAAGTAATTTCGAATTCCTTGCACCCCCGCGAAGATCGAATCAAATG
ATGCATCGTTATCAGCAACAAGCTGCAAATCAAATTCAACAAAGACCTCAAGATAATAGT
TATCAAGATCGTGTCTATTAA
>g10661.t3 Gene=g10661 Length=163
MWGAGCIMAEMWTRSPIMQGSTEQQQLTLCAQLCGSFTTDVWPGLDKLELYHKMELPQNH
KRKVKERLRPYVKDQAAVDLLDQLLILNPEKRINADDALMHDFFWIDPMPADLTKMLSQL
TQSNFEFLAPPRRSNQMMHRYQQQAANQIQQRPQDNSYQDRVY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10661.t3 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 120 | 3.7E-27 |
| 5 | g10661.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 163 | - |
| 2 | g10661.t3 | PANTHER | PTHR24056:SF414 | CYCLIN-DEPENDENT KINASE 9 | 1 | 140 | 2.0E-58 |
| 3 | g10661.t3 | PANTHER | PTHR24056 | CELL DIVISION PROTEIN KINASE | 1 | 140 | 2.0E-58 |
| 1 | g10661.t3 | Pfam | PF00069 | Protein kinase domain | 1 | 104 | 5.8E-9 |
| 7 | g10661.t3 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 104 | 9.249 |
| 4 | g10661.t3 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 105 | 1.08E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
