Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ethanolaminephosphotransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10678 g10678.t2 TSS g10678.t2 11284859 11284859
chr_1 g10678 g10678.t2 isoform g10678.t2 11284970 11285761
chr_1 g10678 g10678.t2 exon g10678.t2.exon1 11284970 11285017
chr_1 g10678 g10678.t2 cds g10678.t2.CDS1 11284970 11285017
chr_1 g10678 g10678.t2 exon g10678.t2.exon2 11285130 11285198
chr_1 g10678 g10678.t2 cds g10678.t2.CDS2 11285130 11285198
chr_1 g10678 g10678.t2 exon g10678.t2.exon3 11285281 11285470
chr_1 g10678 g10678.t2 cds g10678.t2.CDS3 11285281 11285470
chr_1 g10678 g10678.t2 exon g10678.t2.exon4 11285554 11285761
chr_1 g10678 g10678.t2 cds g10678.t2.CDS4 11285554 11285759
chr_1 g10678 g10678.t2 TTS g10678.t2 NA NA

Sequences

>g10678.t2 Gene=g10678 Length=515
ATGGGCTATTTGACAAAAGAAATTCTAGATGGTTTTGACAAGTATAAGTACTCTGCACGA
GACACAAATCCGTTGTCAGTTTATGTTATGTCGCCGTTTTGGGACACAGTAGTGCAGTAC
TTTCCCAAATGGATAGCGCCAAATTTGATGACGTTTCTTGGATTTTTACTAACAGCTCTA
AATTTTGTGATGCTTTCATATTATGATTGGAATTTTTATGCTGAGACCGATAATGAGAGT
TCTCCGTCTATTCCACGATGGTTCTGGCTTTTTGCTGCTGTCAACATTTTTCTTGCATAT
ACGTTAGATGGCATTGACGGAAAGCAAGCACGACGAATAAATTTGAGTGGACCTCTTGGA
GAATTATTTGATCACGGTTTAGATTCATATTCAGCTTCATTGATTCCTGTCTGTTTATAT
AGTGTCTTTGGAAGAGGCGCGCAATATTCAGTTGAACCTATGAGATTTTATTACGTAGTT
CTTATGATACTCGTTAATTTTCATATATCACATTG

>g10678.t2 Gene=g10678 Length=171
MGYLTKEILDGFDKYKYSARDTNPLSVYVMSPFWDTVVQYFPKWIAPNLMTFLGFLLTAL
NFVMLSYYDWNFYAETDNESSPSIPRWFWLFAAVNIFLAYTLDGIDGKQARRINLSGPLG
ELFDHGLDSYSASLIPVCLYSVFGRGAQYSVEPMRFYYVVLMILVNFHISH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g10678.t2 Gene3D G3DSA:1.20.120.1760 - 21 171 9.2E-15
2 g10678.t2 PANTHER PTHR10414:SF71 FI05338P 2 171 1.8E-79
3 g10678.t2 PANTHER PTHR10414 ETHANOLAMINEPHOSPHOTRANSFERASE 2 171 1.8E-79
1 g10678.t2 Pfam PF01066 CDP-alcohol phosphatidyltransferase 46 128 6.2E-15
8 g10678.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 48 -
12 g10678.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 49 67 -
10 g10678.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 68 86 -
11 g10678.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 87 105 -
9 g10678.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 106 171 -
6 g10678.t2 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 106 128 -
5 g10678.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 46 68 -
4 g10678.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 83 102 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008654 phospholipid biosynthetic process BP
GO:0016780 phosphotransferase activity, for other substituted phosphate groups MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values