Gene loci information

Transcript annotation

  • This transcript has been annotated as Ethanolaminephosphotransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10678 g10678.t3 TSS g10678.t3 11284859 11284859
chr_1 g10678 g10678.t3 isoform g10678.t3 11284970 11286543
chr_1 g10678 g10678.t3 exon g10678.t3.exon1 11284970 11285051
chr_1 g10678 g10678.t3 exon g10678.t3.exon2 11285281 11285470
chr_1 g10678 g10678.t3 cds g10678.t3.CDS1 11285311 11285470
chr_1 g10678 g10678.t3 exon g10678.t3.exon3 11285554 11285773
chr_1 g10678 g10678.t3 cds g10678.t3.CDS2 11285554 11285773
chr_1 g10678 g10678.t3 exon g10678.t3.exon4 11285836 11285873
chr_1 g10678 g10678.t3 cds g10678.t3.CDS3 11285836 11285873
chr_1 g10678 g10678.t3 exon g10678.t3.exon5 11285942 11286543
chr_1 g10678 g10678.t3 cds g10678.t3.CDS4 11285942 11286543
chr_1 g10678 g10678.t3 TTS g10678.t3 11286967 11286967

Sequences

>g10678.t3 Gene=g10678 Length=1132
ATGGGCTATTTGACAAAAGAAATTCTAGATGGTTTTGACAAGTATAAGGTAAAGAAAAAT
AAAAATTTTACTTCACTTTTTCTACTTTCCCAAATGGATAGCGCCAAATTTGATGACGTT
TCTTGGATTTTTACTAACAGCTCTAAATTTTGTGATGCTTTCATATTATGATTGGAATTT
TTATGCTGAGACCGATAATGAGAGTTCTCCGTCTATTCCACGATGGTTCTGGCTTTTTGC
TGCTGTCAACATTTTTCTTGCATATACGTTAGATGGCATTGACGGAAAGCAAGCACGACG
AATAAATTTGAGTGGACCTCTTGGAGAATTATTTGATCACGGTTTAGATTCATATTCAGC
TTCATTGATTCCTGTCTGTTTATATAGTGTCTTTGGAAGAGGCGCGCAATATTCAGTTGA
ACCTATGAGATTTTATTACGTAGTTCTTATGATACTCGTTAATTTTCATATATCACATTG
GGAAAAGTACAACACTGGAGTTCTCTTTCTTCCATGGGGCTATGATTTTGCAATGTGGGG
AAGCACACTCATGTATTTGGCAACATATTTTTTTGGATCAGGCATCTATCATATTCCTTT
AACACCAAATGGTCTTACGTGTGGCCATTTTCTAGAATATGTTTTACATATCAGCGCGTT
ATCAAACATTCCAATGGTTTTTTATAACCTTTATAGATCATACGCTGATAAAACAGGCAA
AATGCGTACATTTACGGAGTGTGTGAGACCATTAGTTCCCTTAGCAATTTTTATTGCTAT
TTCTCTTCTTTGGGCACATTATTCTCCAAATAACATCGTTTACAACGATCCACGTGCAGT
TTATCTTCTTACTGGCACAATTTTTAGCAACATCAGTTGTCGATTGATTGTTGCACAAAT
GAGTAACACTAGATGCGAGGCTATGAATTGGACAACGCCATATTTAATATTAGCTTTTCT
TGGTTCAATTTTAATGCCGAGACTCGAAAGAATTTTTCTTTATGGAATGCTAATTCTTTC
AACTTTAACACATTGGCATTATGGAACTGTCGTAGTACAACAAATGTGTGAGCACTTTAA
CCGTATTTGTTTTGGAGTCACACTTAGAACAAAAAAGAATGATGTTGATTAA

>g10678.t3 Gene=g10678 Length=339
MTFLGFLLTALNFVMLSYYDWNFYAETDNESSPSIPRWFWLFAAVNIFLAYTLDGIDGKQ
ARRINLSGPLGELFDHGLDSYSASLIPVCLYSVFGRGAQYSVEPMRFYYVVLMILVNFHI
SHWEKYNTGVLFLPWGYDFAMWGSTLMYLATYFFGSGIYHIPLTPNGLTCGHFLEYVLHI
SALSNIPMVFYNLYRSYADKTGKMRTFTECVRPLVPLAIFIAISLLWAHYSPNNIVYNDP
RAVYLLTGTIFSNISCRLIVAQMSNTRCEAMNWTTPYLILAFLGSILMPRLERIFLYGML
ILSTLTHWHYGTVVVQQMCEHFNRICFGVTLRTKKNDVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g10678.t3 Gene3D G3DSA:1.20.120.1760 - 1 154 2.6E-10
2 g10678.t3 PANTHER PTHR10414:SF71 FI05338P 1 334 6.0E-129
3 g10678.t3 PANTHER PTHR10414 ETHANOLAMINEPHOSPHOTRANSFERASE 1 334 6.0E-129
37 g10678.t3 PIRSF PIRSF015665 CHOPT 1 339 1.3E-96
1 g10678.t3 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 79 2.5E-11
24 g10678.t3 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
25 g10678.t3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
26 g10678.t3 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 11 -
36 g10678.t3 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 16 -
19 g10678.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 34 -
33 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 35 53 -
14 g10678.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 54 72 -
29 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 73 94 -
21 g10678.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 95 105 -
31 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 106 123 -
15 g10678.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 124 134 -
35 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 135 161 -
20 g10678.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 162 172 -
34 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 173 194 -
18 g10678.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 195 213 -
32 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 214 230 -
23 g10678.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 231 241 -
30 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 242 260 -
17 g10678.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 261 271 -
28 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 272 288 -
22 g10678.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 289 293 -
27 g10678.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 294 315 -
16 g10678.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 316 339 -
12 g10678.t3 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 -
10 g10678.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 19 -
8 g10678.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 34 53 -
11 g10678.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 139 161 -
9 g10678.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 176 198 -
6 g10678.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 210 232 -
4 g10678.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 242 261 -
7 g10678.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 270 289 -
5 g10678.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 293 315 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008654 phospholipid biosynthetic process BP
GO:0016780 phosphotransferase activity, for other substituted phosphate groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values