Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ethanolaminephosphotransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10678 g10678.t5 TSS g10678.t5 11284859 11284859
chr_1 g10678 g10678.t5 isoform g10678.t5 11285578 11286906
chr_1 g10678 g10678.t5 exon g10678.t5.exon1 11285578 11285773
chr_1 g10678 g10678.t5 cds g10678.t5.CDS1 11285706 11285773
chr_1 g10678 g10678.t5 exon g10678.t5.exon2 11285836 11285873
chr_1 g10678 g10678.t5 cds g10678.t5.CDS2 11285836 11285873
chr_1 g10678 g10678.t5 exon g10678.t5.exon3 11285942 11286906
chr_1 g10678 g10678.t5 cds g10678.t5.CDS3 11285942 11286543
chr_1 g10678 g10678.t5 TTS g10678.t5 11286967 11286967

Sequences

>g10678.t5 Gene=g10678 Length=1199
GACGAATAAATTTGAGTGGACCTCTTGGAGAATTATTTGATCACGGTTTAGATTCATATT
CAGCTTCATTGATTCCTGTCTGTTTATATAGTGTCTTTGGAAGAGGCGCGCAATATTCAG
TTGAACCTATGAGATTTTATTACGTAGTTCTTATGATACTCGTTAATTTTCATATATCAC
ATTGGGAAAAGTACAACACTGGAGTTCTCTTTCTTCCATGGGGCTATGATTTTGCAATGT
GGGGAAGCACACTCATGTATTTGGCAACATATTTTTTTGGATCAGGCATCTATCATATTC
CTTTAACACCAAATGGTCTTACGTGTGGCCATTTTCTAGAATATGTTTTACATATCAGCG
CGTTATCAAACATTCCAATGGTTTTTTATAACCTTTATAGATCATACGCTGATAAAACAG
GCAAAATGCGTACATTTACGGAGTGTGTGAGACCATTAGTTCCCTTAGCAATTTTTATTG
CTATTTCTCTTCTTTGGGCACATTATTCTCCAAATAACATCGTTTACAACGATCCACGTG
CAGTTTATCTTCTTACTGGCACAATTTTTAGCAACATCAGTTGTCGATTGATTGTTGCAC
AAATGAGTAACACTAGATGCGAGGCTATGAATTGGACAACGCCATATTTAATATTAGCTT
TTCTTGGTTCAATTTTAATGCCGAGACTCGAAAGAATTTTTCTTTATGGAATGCTAATTC
TTTCAACTTTAACACATTGGCATTATGGAACTGTCGTAGTACAACAAATGTGTGAGCACT
TTAACCGTATTTGTTTTGGAGTCACACTTAGAACAAAAAAGAATGATGTTGATTAATTTA
ATGTTTTTTCCATTTTGACTGAATCTTAATTTTAATTAAAATTTTATGCAGCATTTTGTT
ATACTTTAAATTTTATGCATTGCCATTACCCATTGCTTTAGTCTTAATTTATAGTTTTGA
TTTTACAAAAAATGAAATTTAAATTATGACAAAACAAATTGATTCCTTAATGATTTCAAA
AATTATTTTGAAAAACAACTTTACCAAAGTATATAACTATTCATAGATTAAAATTCCTTT
TTAGTTGTTTATTTATAATTTTGCTATTTTTGATTTTTAAGTAGATTTAATGATATATGA
TCAAACGAGACTTTGTGACATTTCCAAAAAAATTAATTACTTCAATTATTAAAATATGT

>g10678.t5 Gene=g10678 Length=235
MRFYYVVLMILVNFHISHWEKYNTGVLFLPWGYDFAMWGSTLMYLATYFFGSGIYHIPLT
PNGLTCGHFLEYVLHISALSNIPMVFYNLYRSYADKTGKMRTFTECVRPLVPLAIFIAIS
LLWAHYSPNNIVYNDPRAVYLLTGTIFSNISCRLIVAQMSNTRCEAMNWTTPYLILAFLG
SILMPRLERIFLYGMLILSTLTHWHYGTVVVQQMCEHFNRICFGVTLRTKKNDVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g10678.t5 PANTHER PTHR10414:SF71 FI05338P 1 230 3.8E-75
2 g10678.t5 PANTHER PTHR10414 ETHANOLAMINEPHOSPHOTRANSFERASE 1 230 3.8E-75
10 g10678.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 34 -
21 g10678.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 35 57 -
15 g10678.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 58 68 -
19 g10678.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 69 90 -
12 g10678.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 91 109 -
17 g10678.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 110 126 -
14 g10678.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 127 137 -
18 g10678.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 138 156 -
9 g10678.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 157 167 -
20 g10678.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 168 184 -
13 g10678.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 185 189 -
16 g10678.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 190 211 -
11 g10678.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 212 235 -
8 g10678.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 35 57 -
4 g10678.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 72 94 -
7 g10678.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 106 128 -
6 g10678.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 138 157 -
3 g10678.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 166 185 -
5 g10678.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 189 211 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values