General information for g10683.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sodium/hydrogen exchanger 3.
Parent gene
- The parent gene g10683 is located on chr_1: 11311946..11314056 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10683 | g10683.t1 | isoform | g10683.t1 | 11301058 | 11314056 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon1 | 11301058 | 11301210 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS1 | 11301058 | 11301210 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon2 | 11301277 | 11301559 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS2 | 11301277 | 11301559 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon3 | 11302149 | 11302412 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS3 | 11302149 | 11302412 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon4 | 11302545 | 11302859 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS4 | 11302545 | 11302859 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon5 | 11302934 | 11303072 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS5 | 11302934 | 11303072 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon6 | 11303164 | 11303381 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS6 | 11303164 | 11303381 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon7 | 11303573 | 11303991 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS7 | 11303573 | 11303991 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon8 | 11304060 | 11304217 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS8 | 11304060 | 11304217 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon9 | 11304313 | 11304448 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS9 | 11304313 | 11304448 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon10 | 11305759 | 11305815 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS10 | 11305759 | 11305815 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon11 | 11306181 | 11306264 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS11 | 11306181 | 11306264 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon12 | 11306373 | 11306445 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS12 | 11306373 | 11306445 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon13 | 11307186 | 11307287 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS13 | 11307186 | 11307287 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon14 | 11310797 | 11310850 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS14 | 11310797 | 11310850 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon15 | 11311095 | 11311259 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS15 | 11311095 | 11311259 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon16 | 11311946 | 11312165 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS16 | 11311946 | 11312165 |
| chr_1 | g10683 | g10683.t1 | exon | g10683.t1.exon17 | 11313759 | 11314056 |
| chr_1 | g10683 | g10683.t1 | cds | g10683.t1.CDS17 | 11313759 | 11314056 |
| chr_1 | g10683 | g10683.t1 | TSS | g10683.t1 | NA | NA |
| chr_1 | g10683 | g10683.t1 | TTS | g10683.t1 | NA | NA |
Sequences
>g10683.t1 Gene=g10683 Length=3138
ATGTTAGCATTTATGAAAGAGAACATGATGTTGTCGAAGAAGAAAAATCTAATTTTTATG
GTGCTGTTCAATGTGCTCTTACTTAACTGTGGTTACGTTCAAGCTAGGCCAAATGCAACT
GCGAGTTTTCAAGGAACGGGAGATAACTCTAAAATTCAATCGCTTGAACCCCCTAATTTA
AATTTACCTACTGGAGATGCTTCTTCTTCTCATATAAATCATGAAGACTCAGCCTTGCCT
TCAATTCAACATGATCATCATATGATAAAATCAGTACAACACAATGACGAGCATGTCGCA
CATGGTGAGCATGCTTCTGAAGTTGGTGGACATTCTGTGCCTGAAAGATATCCAGTAACA
ACTGTGGATTTTGCGCGTGTAGAATTGCCATTTATTATTGGTATTTGGATACTATTTGCT
AGTATCGCGAAAATTGGTTTTCATATGACACCGAAAATCAATAAAATCCTGCCCGAATCG
TCGCTTTTGATTGTTGTTGGAATTGTCATTGGACTGATACTTTACACATCGACTAAATTA
CATGTGCAACCGTTAACACCAAACACTTTCTTCTTTTATATGTTGCCACCAATAATTTTA
GATGCCGGATATTTTATGCCAAATCGTTTATTCTTTGACAATATCGGTACTATTTTACTC
ATGGCTGTGGTTGGAACAATTTACAATGTTGCAACTATCGGTGGCGCACTATATTTTTGT
GGCATGACAGGGATTTTCGGAGTTGAAACTCCCCTTCTCGATACATTCCTATTTTCATCG
CTGATCTCAGCGGTTGATCCAGTAGCTGTCTTAGCAGTATTTGAAGAAATTCATGTAAAT
GAAATTTTATACATTGTTGTATTTGGCGAATCGCTACTCAACGATGCTGTCACTGTCGTA
CTTTATCACATGTTTGAGACCTATAATGAAATGGGTGCAAGTAATATACAACTTGCAGAT
GTCGTCAATGGAGCACTTTCATTTTTGTGTGTTGCACTTGGAGGTGTTGCTATTGGTGTA
ATTTGGGGTTTCTTGACTGGCCTTGTCACGAGATTCACAGATCACGTTCGTGTCATTGAG
CCAATATTTGTGTTCGTTATGGCTTACTTGGCATATTTAAATGCTGAGATATTTCATTGG
AGTGGTATTTTGGCAATAACTTTTTGTGGTATAACCATGAAAAATTATGTGGAGGCCAAT
ATATCGCACAAATCACATACTACAATAAAGTATGCCTTGAAGATGCTGTCCAGCTCGTCA
GAAACAATTATTTTCATATTTCTGGGAGTTGCGACAGTTAATAATCAACATGTATGGAAT
ACATGGTTTGTACTATTAACTATTGTATTCTGCTCAGTTTTTCGTGTGATAGGTGTGATT
ATGCTCGTTGCAATTGCTAATCGTTTTAGAATTCATAAGTTATCAAATGTCGATCAATTT
GTCATGTCATATGGCGGTCTAAGAGGTGCAATTGCATTTGCATTAGTCCTTCTTATCGAT
CCAAATCATGTTCCACTCGCGCCATTGTTTGTAACAACGACAATTTGCGTGATATACTTC
ACCGTCTTTCTTCAGGGTATTACAATAAAGCCACTTGTCAGAATCTTAAATGTAAAACGC
GCAGAAAAACGAAAACCAACAATGAATGAGCGAATTCATGAGCGTTTTATTGATCATATG
ATGGCAGGCATGGAAGATATTTGTGGTAAAACTGGAAACTATACAATTCGTGATAAATTT
AAGCGATTCGATAATCGTTTTATTCGTCCATACTTGATTAGAGATCTCAAGGGCGCTGAA
CCAAAGATCATTGAGACTTATTCAAAATTGGCTATGAAAGATGCAATCGATTATATGCGC
CGTAATCCATCAACAATTGGACAGATGACTGGAACAGAATCAATGAGTGCTTTATTCAGA
AATTATACTAGTGGAGCTTTGGGTGGAAGTCCAAGCTTTTCAAACTTTGAATCATCAACA
CGAAATTTAGACATGCAAGAATTGGACTATAATCCATCAAGAAAAGACTTGACTGACGCA
AGAATTCATCATTTGTTGGCAGAAGAGCTTAAACCATATCGAAGACACCGCCGACTTAGC
TATAGCAGACACACTGTAGACGATCGTGATTTATCGACGCAAGTCAACTATAAAATGAGA
ATGAATATTCACCGCATGGCACAAGGTGATCGCAAACATCATAAGCGAAGTAAACGGATG
AATAAGGATGGCTCAAAGCAAAATCACGTCTCATTCCCCGAATTCCAGCAAAATGGTTCA
GCTAAACAACTTGCGAACGATTACATAAATGAAGTTTTAAATGAAAAACATGAAGAAGAT
TCGAGACAAGCGCAATCTGACGACTGGGAAGGTGGACTAACATTCATTGCTAAATCATCT
CGAGAAAATGGAAACGCTCAGGATGAGAGCAAACGCTATTCAAGAGATTCTGAAGGAGAA
GCAAATCGTGTCACAACACCAACCGCACCAGAATCAATTTTGCCATGGAAGCGTGAGGAC
GATAAAGAGGATTGTGGAGTTATTCAGCAAACAGAATTCCCTTCATGGGCCAATAATAAA
GAATATCTTGCTTATAATTCACCTAGTGCCACTTTCTTAGGTGGAATCACAAAACCTAAA
CAGAAAAACTCTGTAATAGGTCTCTTTAGACGTGAAAGTCATGGTGAATCTGATGGCGGT
GGAATTCGTGATAAACGATCAGGATCGATAGGCGGTCAAGTCGTTTATGAAATTGAGCCA
ACGGGACATTCATCACAATTTCCAGTAACAGCGAGCCATAGAAGAAATACAAGAAAAGGC
TCATTACTGGAAGTGTCTGGAGATACAACCATCCCCGAAGAGATTCTTGACGCAACAAAA
TTACCTAAACGAGGAGGAGGACAACCACAGCAGTACATAATTGCAAAAACAACTCCTAAA
AATACACGTAGTCGTAATAATGGTAGTAGCAGTCAACAAACACGTGGTCTTTTATCACAT
AGCTCAGATTCTGAAATCTCTGATGATGGTGGTGTTAAAGAGAAACTAATGAAGCAGCAG
AAATCAAAACTGCATTTTTCAGTTGGAAGCGACGATGAAGATGATGAAGAAGAGGGATTG
AGAATGAAACGATCCTGA
>g10683.t1 Gene=g10683 Length=1045
MLAFMKENMMLSKKKNLIFMVLFNVLLLNCGYVQARPNATASFQGTGDNSKIQSLEPPNL
NLPTGDASSSHINHEDSALPSIQHDHHMIKSVQHNDEHVAHGEHASEVGGHSVPERYPVT
TVDFARVELPFIIGIWILFASIAKIGFHMTPKINKILPESSLLIVVGIVIGLILYTSTKL
HVQPLTPNTFFFYMLPPIILDAGYFMPNRLFFDNIGTILLMAVVGTIYNVATIGGALYFC
GMTGIFGVETPLLDTFLFSSLISAVDPVAVLAVFEEIHVNEILYIVVFGESLLNDAVTVV
LYHMFETYNEMGASNIQLADVVNGALSFLCVALGGVAIGVIWGFLTGLVTRFTDHVRVIE
PIFVFVMAYLAYLNAEIFHWSGILAITFCGITMKNYVEANISHKSHTTIKYALKMLSSSS
ETIIFIFLGVATVNNQHVWNTWFVLLTIVFCSVFRVIGVIMLVAIANRFRIHKLSNVDQF
VMSYGGLRGAIAFALVLLIDPNHVPLAPLFVTTTICVIYFTVFLQGITIKPLVRILNVKR
AEKRKPTMNERIHERFIDHMMAGMEDICGKTGNYTIRDKFKRFDNRFIRPYLIRDLKGAE
PKIIETYSKLAMKDAIDYMRRNPSTIGQMTGTESMSALFRNYTSGALGGSPSFSNFESST
RNLDMQELDYNPSRKDLTDARIHHLLAEELKPYRRHRRLSYSRHTVDDRDLSTQVNYKMR
MNIHRMAQGDRKHHKRSKRMNKDGSKQNHVSFPEFQQNGSAKQLANDYINEVLNEKHEED
SRQAQSDDWEGGLTFIAKSSRENGNAQDESKRYSRDSEGEANRVTTPTAPESILPWKRED
DKEDCGVIQQTEFPSWANNKEYLAYNSPSATFLGGITKPKQKNSVIGLFRRESHGESDGG
GIRDKRSGSIGGQVVYEIEPTGHSSQFPVTASHRRNTRKGSLLEVSGDTTIPEEILDATK
LPKRGGGQPQQYIIAKTTPKNTRSRNNGSSSQQTRGLLSHSSDSEISDDGGVKEKLMKQQ
KSKLHFSVGSDDEDDEEEGLRMKRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 59 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 761 | - |
| 62 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 742 | - |
| 63 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 761 | - |
| 65 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 841 | - |
| 60 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 819 | - |
| 64 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 924 | 946 | - |
| 57 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 975 | 1045 | - |
| 58 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 975 | 1005 | - |
| 61 | g10683.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1006 | 1030 | - |
| 2 | g10683.t1 | PANTHER | PTHR10110 | SODIUM/HYDROGEN EXCHANGER | 89 | 851 | 0.0 |
| 3 | g10683.t1 | PANTHER | PTHR10110:SF98 | SODIUM/HYDROGEN EXCHANGER | 89 | 851 | 0.0 |
| 5 | g10683.t1 | PRINTS | PR01084 | Na+/H+ exchanger signature | 189 | 200 | 4.8E-18 |
| 7 | g10683.t1 | PRINTS | PR01084 | Na+/H+ exchanger signature | 203 | 217 | 4.8E-18 |
| 4 | g10683.t1 | PRINTS | PR01084 | Na+/H+ exchanger signature | 218 | 226 | 4.8E-18 |
| 6 | g10683.t1 | PRINTS | PR01084 | Na+/H+ exchanger signature | 259 | 269 | 4.8E-18 |
| 11 | g10683.t1 | PRINTS | PR01087 | Na+/H+ exchanger isoform 3 (NHE3) signature | 342 | 349 | 1.1E-7 |
| 10 | g10683.t1 | PRINTS | PR01087 | Na+/H+ exchanger isoform 3 (NHE3) signature | 383 | 395 | 1.1E-7 |
| 9 | g10683.t1 | PRINTS | PR01087 | Na+/H+ exchanger isoform 3 (NHE3) signature | 542 | 552 | 1.1E-7 |
| 12 | g10683.t1 | PRINTS | PR01087 | Na+/H+ exchanger isoform 3 (NHE3) signature | 683 | 704 | 1.1E-7 |
| 8 | g10683.t1 | PRINTS | PR01087 | Na+/H+ exchanger isoform 3 (NHE3) signature | 789 | 803 | 1.1E-7 |
| 1 | g10683.t1 | Pfam | PF00999 | Sodium/hydrogen exchanger family | 134 | 534 | 6.0E-84 |
| 29 | g10683.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 35 | - |
| 30 | g10683.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 16 | - |
| 31 | g10683.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 17 | 28 | - |
| 45 | g10683.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 29 | 35 | - |
| 24 | g10683.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 36 | 128 | - |
| 33 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 129 | 147 | - |
| 15 | g10683.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 148 | 158 | - |
| 32 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 159 | 178 | - |
| 26 | g10683.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 179 | 189 | - |
| 40 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 190 | 206 | - |
| 17 | g10683.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 207 | 217 | - |
| 41 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 218 | 246 | - |
| 27 | g10683.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 247 | 251 | - |
| 38 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 274 | - |
| 21 | g10683.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 275 | 280 | - |
| 37 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 281 | 305 | - |
| 23 | g10683.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 306 | 324 | - |
| 43 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 325 | 349 | - |
| 16 | g10683.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 350 | 355 | - |
| 44 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 356 | 372 | - |
| 22 | g10683.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 373 | 377 | - |
| 36 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 378 | 397 | - |
| 20 | g10683.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 398 | 408 | - |
| 39 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 409 | 430 | - |
| 28 | g10683.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 431 | 441 | - |
| 35 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 442 | 465 | - |
| 18 | g10683.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 466 | 476 | - |
| 34 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 477 | 499 | - |
| 25 | g10683.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 500 | 504 | - |
| 42 | g10683.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 505 | 524 | - |
| 19 | g10683.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 525 | 1045 | - |
| 14 | g10683.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 35 | - |
| 13 | g10683.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 35 | - |
| 66 | g10683.t1 | TIGRFAM | TIGR00840 | b_cpa1: sodium/hydrogen exchanger 3 | 123 | 706 | 4.7E-207 |
| 54 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 17 | 35 | - |
| 50 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 127 | 149 | - |
| 49 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 156 | 175 | - |
| 48 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 190 | 212 | - |
| 55 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 225 | 247 | - |
| 56 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 304 | - |
| 47 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 325 | 347 | - |
| 52 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 362 | 384 | - |
| 46 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 443 | 465 | - |
| 53 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 480 | 499 | - |
| 51 | g10683.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 506 | 528 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0015385 | sodium:proton antiporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0006885 | regulation of pH | BP |
| GO:0015299 | solute:proton antiporter activity | MF |
| GO:0006812 | cation transport | BP |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K12040 (solute carrier family 9 (sodium/hydrogen exchanger), member 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
