General information for g10690.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dolichol-phosphate mannosyltransferase subunit 1.
Parent gene
- The parent gene g10690 is located on chr_1: 11336998..11339776 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10690 | g10690.t1 | TTS | g10690.t1 | 11336191 | 11336191 |
| chr_1 | g10690 | g10690.t1 | isoform | g10690.t1 | 11336225 | 11336998 |
| chr_1 | g10690 | g10690.t1 | exon | g10690.t1.exon1 | 11336225 | 11336846 |
| chr_1 | g10690 | g10690.t1 | cds | g10690.t1.CDS1 | 11336225 | 11336846 |
| chr_1 | g10690 | g10690.t1 | exon | g10690.t1.exon2 | 11336907 | 11336998 |
| chr_1 | g10690 | g10690.t1 | cds | g10690.t1.CDS2 | 11336907 | 11336998 |
| chr_1 | g10690 | g10690.t1 | TSS | g10690.t1 | 11337083 | 11337083 |
Sequences
>g10690.t1 Gene=g10690 Length=714
ATGGATAAGTATTCTATTCTTCTACCAACATATAATGAAAGACAAAACCTGCCGATAATT
GTATGGTTGCTTATAAAATATCTCGATCAGAGCAAAATAAATTATGAAATAATCATAATT
GATGATGGAAGTCCTGATGGAACACAAGATGTGGCAAAAGAACTAATTAAAATTTATGGA
GATGATAAAATTTTACTTAGACCAAGAGAAAAGAAATTAGGATTGGGAACAGCTTACGTT
CATGGAATGAGCCATGCAAGTGGAAATTTTATTATCATTATGGATGCCGATTTGAGTCAT
CATCCGAAATTCATTCCAAAATTTATTGAACTTCAAAAGAAGCATGATTATGATATTGTG
TCTGGAACGCGATATAAAGGTGAAGGTGGTGTTTATGGCTGGGATTTTAAGAGAAAACTC
ATTTCAAGAGGCGCAAACTTTTTATCACAATTTCTTTTAAGACCAAATGCAAGTGATTTG
ACAGGTTCATTTCGATTGTATAAAAAAGATGTTCTTACAAAGTTGATTGCAGCATGTGAG
TCAAAAGGCTATGTTTTTCAAATGGAAATGATTGTACGCGCAAGAGCTCTTAAATTTACA
ATTGGTGAAGTCCCAATAACATTTGTCGATCGAGTTTACGGTGATAGCAAAATGGGAGCA
ACTGAAATAATTCAATTTGCTAAAAATCTTTTGTATTTCTTTGCAACTATTTAA
>g10690.t1 Gene=g10690 Length=237
MDKYSILLPTYNERQNLPIIVWLLIKYLDQSKINYEIIIIDDGSPDGTQDVAKELIKIYG
DDKILLRPREKKLGLGTAYVHGMSHASGNFIIIMDADLSHHPKFIPKFIELQKKHDYDIV
SGTRYKGEGGVYGWDFKRKLISRGANFLSQFLLRPNASDLTGSFRLYKKDVLTKLIAACE
SKGYVFQMEMIVRARALKFTIGEVPITFVDRVYGDSKMGATEIIQFAKNLLYFFATI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10690.t1 | CDD | cd06442 | DPM1_like | 6 | 233 | 0 |
| 4 | g10690.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 2 | 231 | 0 |
| 2 | g10690.t1 | PANTHER | PTHR43398 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 | 2 | 236 | 0 |
| 1 | g10690.t1 | Pfam | PF00535 | Glycosyl transferase family 2 | 5 | 174 | 0 |
| 3 | g10690.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 2 | 234 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004582 | dolichyl-phosphate beta-D-mannosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00721 (dolichol-phosphate mannosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
